Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1224
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81576-7|CAB04645.2|  164|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF040659-5|AAO12389.1|  674|Caenorhabditis elegans Half transpor...    28   6.3  
AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transpor...    28   6.3  

>Z81576-7|CAB04645.2|  164|Caenorhabditis elegans Hypothetical
           protein R10E8.2 protein.
          Length = 164

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 541 IDE*LSNQNIKQVHLVSNRQRQLDFDI 621
           I E L +  +K +HL +N++ ++DFDI
Sbjct: 8   IIESLDSGALKSIHLSTNKEEEMDFDI 34


>AF040659-5|AAO12389.1|  674|Caenorhabditis elegans Half transporter
           (pgp related)protein 9, isoform b protein.
          Length = 674

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = +2

Query: 158 YVDRKWKY-----MILLCNSLDLCMIPAYFNNLSLIIFINKVNSSRL 283
           Y+ R+WKY       L C SL    IP Y   +   +F +K +  +L
Sbjct: 197 YMGRQWKYYGMAFFFLFCYSLSRVFIPYYTGEVVTAVFGDKASYEKL 243


>AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transporter
           (pgp related)protein 9, isoform a protein.
          Length = 815

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = +2

Query: 158 YVDRKWKY-----MILLCNSLDLCMIPAYFNNLSLIIFINKVNSSRL 283
           Y+ R+WKY       L C SL    IP Y   +   +F +K +  +L
Sbjct: 197 YMGRQWKYYGMAFFFLFCYSLSRVFIPYYTGEVVTAVFGDKASYEKL 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,066,289
Number of Sequences: 27780
Number of extensions: 314288
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)