Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1224
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 182 MILLCNSLDLCMIPAYFNNLSLII 253
           +ILL N +D+C I   ++ L +II
Sbjct: 82  LILLQNIIDICWITMVYSLLGIII 105


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 145 NVQIVCGPQMEIYDI 189
           NV+ VC PQ+ ++D+
Sbjct: 143 NVRSVCPPQLLVFDL 157


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +1

Query: 145 NVQIVCGPQMEIYDI 189
           N+Q++C P++  +D+
Sbjct: 149 NIQLMCSPKLLAFDL 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,621
Number of Sequences: 438
Number of extensions: 4241
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)