Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1219
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 35 0.011
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 32 0.080
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 31 0.19
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 30 0.43
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.57
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 29 0.75
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 29 0.99
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 4.0
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 4.0
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 4.0
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 5.3
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 26 5.3
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 5.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 5.3
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 26 7.0
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 7.0
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 7.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 7.0
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 7.0
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 26 7.0
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 25 9.2
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.2
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 9.2
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 35.1 bits (77), Expect = 0.011
Identities = 22/98 (22%), Positives = 48/98 (48%)
Frame = +3
Query: 9 KLHAALLLTIFVLAARAASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRA 188
K + + + + + R ++ ++ E D PLN D+ S +E D ++ ID +R
Sbjct: 67 KTYTSFVQELLIDPWRKLTLHEESGENSDHPLNTSDD-SKWKEYFDDNQILEQIDKDIRR 125
Query: 189 NKKEVIDIPVKVIVEEIKPSLKSDLENVEVPDENEEIK 302
++ K + + KPS+ + EN+ V E+++++
Sbjct: 126 TLPDLSFFQGKSEINK-KPSVNNVSENISVNTEDDKVE 162
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 32.3 bits (70), Expect = 0.080
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Frame = +3
Query: 123 SSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVEVPDENEEIK 302
S+ +EL+D+ KD+ +A K EV+D+ VK E+++ KS N E E E ++
Sbjct: 465 STYKELMDRVQN-KDLLCQEQARKLEVLDLNVKSSREQLQYVSKS---NQEHKKEVEALQ 520
Query: 303 RPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND--INTAEIALRQGFQEVSDGIG 476
LV+ E+E E + EK N+ I T L Q ++E + I
Sbjct: 521 LQLVNSSTELESVKSENEKLKNELVLEIEKRKKYETNEAKITTVATDLSQYYRESKEYIA 580
Query: 477 KWYA---RTEQINE 509
Y RTE+ N+
Sbjct: 581 SLYEKLDRTERNNK 594
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 31.1 bits (67), Expect = 0.19
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Frame = +3
Query: 114 DNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVEVP---- 281
DN E +D +N +++ + +NK E ++ + EE K S+ E+ +
Sbjct: 78 DNSKKESTNLDDSNMLEEPKHHDNSNK-ESTNLDDLNMSEEPKHHDSSNKESTNLDNSNM 136
Query: 282 DENEEIK-------RPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 431
DE+E K +P D RN GP Q + + + PE H ++ E+ + + ++ N E
Sbjct: 137 DESENQKNFKIEEPKPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 29.9 bits (64), Expect = 0.43
Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 3/224 (1%)
Frame = +3
Query: 54 RAASIPDKVPEAE--DKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVI 227
++ SIP ++ E D P+N NL S + D K I+NS+ A ++V+D +
Sbjct: 6 QSESIPHEILPKEPFDLPMN---NLKSSPKNKDSE---KRINNSI-AESEQVVDSALS-- 56
Query: 228 VEEIKPSLKSDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHH-EDAEKIVSS 404
+ + D+ ++P +N EI + P T H K+ +
Sbjct: 57 --NPETNANEDIIAPQLPSQNSEI------IEKNSPVNKLNSSTSLTTHQLASLPKLEVT 108
Query: 405 VKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNETLHF 584
++++ AE + +E + + TE + + A + N + Q N T +
Sbjct: 109 DHDNVSEAETVVLNEDEEKETSLVGSVSVTEDLGDSSAIGRTILVNNSVEPQMEN-TANI 167
Query: 585 IKPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSE 716
TI +PS++E+ ++ + +ETN NS L + SE
Sbjct: 168 -----TIVSPSLKESDFESEEKATNDNNGLIETNHNSKLEESSE 206
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.57
Identities = 48/235 (20%), Positives = 103/235 (43%), Gaps = 11/235 (4%)
Frame = +3
Query: 45 LAARAASIPDKVPEAED--KPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPV 218
+A+ I K E +D L+VV + E L+ + T K +++ + N+ + I+ V
Sbjct: 1027 IASLQTEIEKKRAENDDLQSKLSVVSS-EYENLLLISSQTNKSLED--KTNQLKYIEKNV 1083
Query: 219 KVIVEEIKPSLKSDLENV-----EVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHED 383
+ +++E K +LE + ++ +EN +IK L+ LR QH + E
Sbjct: 1084 QKLLDE-KDQRNVELEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFVDDLKEK 1142
Query: 384 AEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFG---AQ 554
++ + + N+ N ++L Q + + ++++++ SL +
Sbjct: 1143 SDAL-EQLTNEKNELIVSLEQSNSNNEALVEERSDLANRLSDMKKSLSDSDNVISVIRSD 1201
Query: 555 IQKLNETLHFI-KPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSE 716
+ ++N+ L + K D+++ E Q++ + + LK E +FN L E
Sbjct: 1202 LVRVNDELDTLKKDKDSLSTQYSEVCQDR---DDLLDSLKGCEESFNKYAVSLRE 1253
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 29.1 bits (62), Expect = 0.75
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Frame = +3
Query: 57 AASIPDKVPE--AEDKPL--NVVDNLSSEQELIDQANTIKDI-DNSLRANKKEVIDIPVK 221
A ++ VPE AED + + V SE + +++ ++D +NS+ +KK +P
Sbjct: 502 AIALQSSVPENKAEDSVVLKSSVPEDKSEDSVPSKSSVLEDKHENSVEIDKKADDSLPSN 561
Query: 222 VIVEEIKPSLKSDLENVEVPDENEEIKRPLVDLRNPG 332
E PS+ + +N P+ + + P V PG
Sbjct: 562 NKTEGYTPSVVREEKNYSEPNASPSVIPPRVPTPVPG 598
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 28.7 bits (61), Expect = 0.99
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = +3
Query: 102 LNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVK----VIVEEIKPSLKSDLEN 269
+ V+ ELID+A DI + + +D V+ ++ +E++ + + D+E
Sbjct: 867 IGFVEKPDKVTELIDEAEENIDISQDISMTETNAVDDEVQAENSILQDEVEETRQDDIEK 926
Query: 270 VEVPDENE-EIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 431
E+ D E + L L + E Q+PE ++S +ND T E
Sbjct: 927 DELEDIKEVKEDENLTTLEETIEIPANDIEVQDPEQC----SCMNSTENDNITTE 977
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.7
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +3
Query: 81 PEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSD 260
P+ E++PL + + E D +T ++I + D P+KV +PS +D
Sbjct: 502 PKEEERPLPSEPSQNQPAEYRDTPDTPRNI---MPLPGLMSADQPIKVT----EPSNDAD 554
Query: 261 LENV-EVPDENEEIKRPLVDLRNPGPPQHQEHETQNPE 371
V E P+ EE K P++ + Q H+T +PE
Sbjct: 555 KAIVAEGPNNEEETKGPVIP-ETQETSEQQVHKTPSPE 591
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +3
Query: 177 SLRANKKEVIDIPVKVIVEEIKPSLKSDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 356
SL N +++ ++ E I+ S + E+ ENE + +DLR ++ E
Sbjct: 5 SLSPNVEDLKKKQIRQYKEIIRISKAQSIRIKELQLENERLLSENIDLRTTAINLEEQLE 64
Query: 357 TQNPEHHEDAEKIVS 401
T E+ E+ K+ +
Sbjct: 65 TVQNENEENKTKLAA 79
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 336 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 422
P +++ T++ E HED + V +++D N
Sbjct: 24 PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 325 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 432
+P P S+ HR LN K+ F P + T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 258 DLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSS 404
D E+ + P + E K P + GP + H+ +H+E E+ + S
Sbjct: 388 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQS 436
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 5.3
Identities = 20/89 (22%), Positives = 35/89 (39%)
Frame = +3
Query: 102 LNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVEVP 281
L N ++Q + NT + + +E P E KP+ E +
Sbjct: 65 LTAAPNTHAQQANLQSGNTSITHETQSTSRGQEATTSPSLSASHE-KPARPQTGEGSDNE 123
Query: 282 DENEEIKRPLVDLRNPGPPQHQEHETQNP 368
DE+E+I + DL + + Q E ++P
Sbjct: 124 DEDEDIDALIEDLYSQDQEEEQVEEEESP 152
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 243 PSLKSDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQN 365
PS K E +++ E I + VD+ NPG + ET N
Sbjct: 40 PSSKFQNEPLQLNSEESSIMQRYVDMLNPGATFVNDSETFN 80
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 5.3
Identities = 29/156 (18%), Positives = 69/156 (44%), Gaps = 2/156 (1%)
Frame = +3
Query: 231 EEIKPSLKSDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVK 410
E+ K ++S++ E ++ ++ L+DL +E E+ + E + E V
Sbjct: 988 EQFKHLVESEISTRE--EKITSLRSELLDLNKRVEVLKEEKESSSKELAKQLEDAVRE-- 1043
Query: 411 NDINTAEIALRQGFQEV-SDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNETLHFI 587
+ ++ ++ ++++ SD + E I + ++ ++ N+ ++I T +
Sbjct: 1044 ---KDSALSFKKDYEKIRSDADRVITSLKEDIEKERSLMKECHSNYESEIVSHGRTTQKL 1100
Query: 588 KPADT-IAAPSVEETQNKASFETIESGLKSLETNFN 692
+ T + + + KA+FE SGL E ++N
Sbjct: 1101 RDLRTEFDEVNTKYLKLKANFEQQHSGLSGAEKDWN 1136
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 7.0
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Frame = +3
Query: 105 NVVDNLSSEQE--------LIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEI 239
NVVD+LS EQE L DQ N + NSLR+ +P + V++I
Sbjct: 137 NVVDDLSKEQESRKESAPQLYDQINAFIEKVNSLRSG-----SVPFTITVDDI 184
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +3
Query: 333 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 500
PP H ++ TQ HEDA+ S + + I R ++ G + EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 7.0
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +3
Query: 393 IVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKL-N 569
++SS N + + A G +++ D + EQ+ L + E FG ++Q++
Sbjct: 1 MISSFSNGFWSKDYAT--GVKKLFDCLDNGVEENEQVKNLLKLYKEANEEFGEKLQEITK 58
Query: 570 ETLHFIKPADTIAAPSVEETQNKASFETIES 662
E L KP +T T NKA FE + S
Sbjct: 59 ECLKGKKPENT----EDGATSNKA-FEGLRS 84
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +3
Query: 588 KPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEGIQIVATFKADGE 755
KP + + PS+ + K T+ + K + T S N I++TF + E
Sbjct: 398 KPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVSNNTQSSFLIISTFTSSYE 453
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 492 TEQINELQASLQHFQENFGAQIQKLNETL 578
+ ++N+LQ ++ + F QI+KLN +
Sbjct: 111 SHEVNDLQTDRENLKHQFEDQIEKLNSEI 139
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +2
Query: 461 VRRYWKMVRSYRAN*RAPGQLA--TFPRKFRRS-DTKVE*N 574
+R+ W VR +R+N R QL TFP+ + DT+ E N
Sbjct: 582 LRKVWDSVREWRSNLRGVLQLVYETFPKFITNAVDTRQELN 622
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 438 LRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNETLHFIK 590
+ Q E+ D + K ++IN + + + F+E + KLN+ L +I+
Sbjct: 9 MEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQ 59
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = +3
Query: 60 ASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD----IDN----SLRANKKEVIDIP 215
A PD A + L++ DN+SS NTI + ID+ +L N +++ +
Sbjct: 431 ADTPDSYLAAPKERLSISDNMSSSSSQTATVNTISNYLNVIDSVREIALTVNDEKIYGLA 490
Query: 216 VKVIVEEIKPSLKS 257
+ +++++ S
Sbjct: 491 ISLLIQKFSRKFDS 504
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 328 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 471
P + + K I +K++ + LP+ +T Q K LFVK+ C+ V
Sbjct: 39 PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,141
Number of Sequences: 5004
Number of extensions: 55095
Number of successful extensions: 254
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -