Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1218
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    29   0.55 
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    28   1.7  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    26   5.2  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   5.2  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   6.8  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    26   6.8  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   6.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.0  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   9.0  

>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 29  HRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLT 184
           HR+DI++  Q  +      L+   K Q  +N+ ++ K + EK + L  DN++
Sbjct: 59  HRIDILSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVS 110


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 548 DEKSRVFIVKNEQNIEYLKANKYYAFHSDSVDNFEFENDS 667
           D+ S+VF +  +Q I  L       +HS SV    F NDS
Sbjct: 201 DQTSKVFDLSTQQCITRLGRRGVDGYHSHSVKQVNFCNDS 240


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 677 AFFCYRFQTQNYQRYRY 627
           +FFC+R Q Q+  +YRY
Sbjct: 155 SFFCFRRQIQHMLKYRY 171


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +2

Query: 29  HRVD--IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKS 142
           HR++  ++  ++ E++  +S L++L+  Q+D N   N+K+
Sbjct: 735 HRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKA 774


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 478  NSRRSVAVLQIHFHLXKRCY 537
            N+++S   +Q +FHL  RCY
Sbjct: 1595 NTQKSQEEIQYYFHLLARCY 1614


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +2

Query: 539 VRRDEKSRVFIVKNEQNIEYLKANKYYAFHSDSVDNFEFENDSKKMLQN 685
           +RR+   +  +  + Q    L  NK   F S    NF F N S K   N
Sbjct: 171 LRRNTSKKSSLSDSSQKENTLTLNKENEFSSKDDSNFAFHNSSTKTTIN 219


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 118 FVDLRFDQRLEQRHVNQLFKLIHINYINPMRIWCVKY 8
           F   RF+Q+  +R   +   L + N I PM+++C KY
Sbjct: 586 FKSYRFNQQFVERVPLKYRSLTYSNKIEPMKVFC-KY 621


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 59   FEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 196
            F+ L+++  LKS+ +TQ+D    + +  M+  L     D+L  S+E
Sbjct: 3741 FKHLVSLQSLKSISRTQVDLTNDEFLNLMNFVLNLF--DSLLSSIE 3784


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 155 LKRLECDNLTDSVEIYGIHDNRLNN 229
           LK LECD L  S+E+   H  + ++
Sbjct: 3   LKCLECDKLLSSIEMAEFHSTKTSH 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,175
Number of Sequences: 5004
Number of extensions: 46280
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)