Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1218
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.        31   0.68 
U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.        31   0.68 
U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family pro...    31   0.68 
U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family pro...    31   0.68 
AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.       31   0.68 
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    29   4.8  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    29   4.8  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    29   4.8  
Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AL132943-3|CAB81974.1|  345|Caenorhabditis elegans Hypothetical ...    28   8.4  
AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +2

Query: 41  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 196
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +2

Query: 41  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 196
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family
           protein 3, isoform b protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +2

Query: 41  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 196
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family
           protein 3, isoform a protein.
          Length = 233

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +2

Query: 41  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 196
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 158 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 206


>AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +2

Query: 41  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 196
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
            protein 19,isoform a protein.
          Length = 1783

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +2

Query: 95   LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 268
            L ++   E   D + S S++ + + CD ++D     G++++R  N     Y++    +C 
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353

Query: 269  LLDLN-FKHVIESSFD 313
             L +N F  VI  +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
            protein 19,isoform b protein.
          Length = 1877

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +2

Query: 95   LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 268
            L ++   E   D + S S++ + + CD ++D     G++++R  N     Y++    +C 
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353

Query: 269  LLDLN-FKHVIESSFD 313
             L +N F  VI  +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
            calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +2

Query: 95   LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 268
            L ++   E   D + S S++ + + CD ++D     G++++R  N     Y++    +C 
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353

Query: 269  LLDLN-FKHVIESSFD 313
             L +N F  VI  +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369


>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 296 IESSFDKNHIVAKLCDATRAKEWQT 370
           +ES++DK H + + C  T + +W T
Sbjct: 131 VESAWDKTHQLFECCGVTNSSDWLT 155


>AL132943-3|CAB81974.1|  345|Caenorhabditis elegans Hypothetical
           protein Y116F11B.6 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 101 KTQIDENVSDNIKSMSEKLKRLECDNLTDS-VEIYGIHDNRLNNKKI 238
           K +I E+V +NIK    KLK++E  NL +S  E+   H   LN K++
Sbjct: 219 KIRIIEDV-ENIKKQDVKLKKIE-KNLKESRKELKEAHQEYLNRKEL 263


>AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical
           protein F17A9.4 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 170 CDNLTDSVEIYGIHDNRLNNKKIRNYYLK 256
           CDNLT S +I G   N  N K  +N +LK
Sbjct: 7   CDNLTVSSKILGEQLNFRNGKTAQNRFLK 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,165,746
Number of Sequences: 27780
Number of extensions: 261404
Number of successful extensions: 877
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)