Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1215
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 31 0.22
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 29 0.51
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 28 1.6
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 2.1
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 27 2.7
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 2.7
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 4.8
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 26 4.8
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 26 4.8
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 6.3
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 8.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 8.4
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 8.4
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 8.4
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 8.4
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.7 bits (66), Expect = 0.22
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 2/148 (1%)
Frame = +2
Query: 218 QTLDKLAHLVHGAAEYAESEEDMLLNN--GPVSDIIDRLEHSLESPSRSSITAAQXXXXX 391
Q+LD+ + S D++++ + ++D LEHSL+ S SS
Sbjct: 659 QSLDEALQSARSSCAVPNSSLDLIVSELKDSKNSLLDALEHSLQDISMSSQKLGNGISSE 718
Query: 392 XXXXXXXXTQPEHQSSVESYMSDEVFVPEPSSDCGLQALSEASVMQATNNVNHYTDPIEK 571
+ ESY V E S LQ E S + V + D + K
Sbjct: 719 LIEL--------QKDMKESYRQ---LVQELRSLYNLQHTHEESQKELMYGVRNDIDALVK 767
Query: 572 SIRDDVASSDTMYSEQVSDLQESYESEK 655
+ + +D + S+ +SD + +ES++
Sbjct: 768 TCTTSLNDADIILSDYISDQKSKFESKQ 795
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 29.5 bits (63), Expect = 0.51
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 500 EGHNHWKVPVQTLHPTYSSPRNF 432
EGHN WKVP HP + + ++F
Sbjct: 478 EGHN-WKVPADKTHPLWKNRKDF 499
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 548 HYTDPIEKSIRDDVASSDTMYSEQVSDLQESYESEKHYVEPQGSIPDQSDD 700
HY D +KS+ +S SE +D + E ++ G +PD DD
Sbjct: 188 HYFDDTDKSVHSKSSSGSNSLSEASND-----DLESSIIQIVGGLPDDFDD 233
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 71 AYGGDMSVHKDLFDTI-SEAHYLPELGGPHDEAL--LDSLVEKGCEDNQILGQTLDKLAH 241
++G S L DTI S ++ + P +++ L+ L E C D + GQTL+ L
Sbjct: 37 SWGNSFSGQAWLRDTIPSLSNVVESQTIPEEDSTSYLNRLEEAFCRDFRCCGQTLEDLHQ 96
Query: 242 LVH 250
L+H
Sbjct: 97 LIH 99
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 596 SDTMYSEQVSDLQESYESEKHYVEPQGSIPDQSDDTSTEDEPKD 727
SD E++SDL++ S++ + + S+ S EDE +D
Sbjct: 215 SDDEDEEEISDLEDWLGSDQSMETSESEEEESSESESDEDEDED 258
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = -1
Query: 559 VSVVIDVVSRLHYG-GFAKRLK 497
+ V++++VSRL+YG F KRLK
Sbjct: 1406 LEVIVNIVSRLNYGTKFQKRLK 1427
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -1
Query: 685 RYRPLGFYV--MFFGFIALL*IRYLFRIHRI 599
R+R LG +V +FF A+L + Y+FR+ ++
Sbjct: 1487 RWRNLGIFVGYVFFNIFAVLLLFYVFRVMKL 1517
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 275 QTLRTRQPRELDGRVCPASVRGFGYLRNLFRPANLAMLHREVL 147
Q L T E GRVCPA G L + P + + R ++
Sbjct: 1694 QLLLTNNFPEFTGRVCPAPCEGACTLGIIESPVGIKSVERAII 1736
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 521 VMQATNNVNHYTDPIEKSIRDDVASSDTMYSEQVSDLQES-YESEKHYVEPQGSIPDQSD 697
V N V + E S + DV + ++S+ +E Y SE P+ S PD +
Sbjct: 29 VSNVPNEVETESSSHEPSFKKDVDEEIPSLTAELSEEEEGEYSSESGRSTPELS-PDDFE 87
Query: 698 DTSTEDE 718
D E+E
Sbjct: 88 DADDEEE 94
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 566 EKSIRDDVASSDTMYSEQVSDLQESYESEKHYVEP-QGSIPDQSDDTSTEDEPKDA 730
E I DD S +S SDL S SE+ ++ SI D SD+ E +D+
Sbjct: 1066 EIKIVDDYYISSNEHSTHASDLA-SVSSEEFVIDDGSSSIIDISDELQDESSSRDS 1120
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/56 (25%), Positives = 22/56 (39%)
Frame = +2
Query: 431 QSSVESYMSDEVFVPEPSSDCGLQALSEASVMQATNNVNHYTDPIEKSIRDDVASS 598
Q S S +P+PS+ S+ + + VN+Y P+ K D S
Sbjct: 564 QGSSSSVTKSPESMPDPSAKASSPVTSKGVSINEKSAVNNYATPLSKPQPKDTKGS 619
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 563 IEKSIRDDVASSDTMYSEQVSDLQESYESEKHYVEPQGSIPDQSDDTSTED 715
+ ++ R D +M +E ++ ES +E PQ P T+T+D
Sbjct: 481 VNRNTRQDDVQDISMETESQNETDESQNTENVDYNPQTHTPVPIPTTATQD 531
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +2
Query: 11 PPEAMYYERKAQAQNCTEDSAYGG 82
PP+ Y+ R C +D ++GG
Sbjct: 453 PPQVQYWARAIMNNYCRKDESHGG 476
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 503 ALSEASVMQATNNVNHYTDPIEKSIRDDVASSDTMYSEQVSDLQESYESE 652
A+ SV N V H+ + K +++ +D + E V DL+ + E
Sbjct: 78 AVQNTSVTAIENVVKHFIELANKRVQEAQEKADKISVEYVDDLEATETPE 127
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 578 RDDVASS-DTMYSEQVSDLQESYESEKHYVEPQGSIPDQSDDTSTEDEPKDA 730
R VA + DT E ++ ESE+ Y+E G + D+ E+E DA
Sbjct: 21 RGTVADNVDTEMGEFEDAYEDEIESEEEYIEADG----EKDNGMDEEEQNDA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,864
Number of Sequences: 5004
Number of extensions: 53006
Number of successful extensions: 222
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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