Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1215
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575 34 0.10
04_04_0251 + 23930789-23930960,23931065-23931128,23931641-239317... 31 0.94
04_04_1291 - 32404716-32404946,32405377-32405478,32405731-324059... 31 1.2
01_06_0676 + 31101633-31102192,31102450-31102807,31103033-31103305 30 1.6
11_06_0003 - 19155407-19155953,19156114-19156148 29 3.8
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783 29 3.8
02_01_0682 + 5064127-5065170,5066234-5066317 29 5.0
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 28 8.7
07_03_0183 - 14822973-14823139,14823232-14823627,14823861-148240... 28 8.7
>06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575
Length = 812
Score = 34.3 bits (75), Expect = 0.10
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +2
Query: 128 HYLPELGGPHDEALLD---SLVEKGCEDNQILGQTLDKLAHLVHGAAEYAESEEDMLLN- 295
HY GGPHD LL+ S+VEK C + +TL L H E+ ED + N
Sbjct: 333 HYAFRGGGPHDPKLLEIGKSIVEKCC-GIPLAAKTLGSLLCTSHDVGEWRRVMEDKIWNT 391
Query: 296 NGPVSDIIDRLEHSLES 346
V +I L+ S ++
Sbjct: 392 EAKVYGLIPALKLSYDA 408
>04_04_0251 +
23930789-23930960,23931065-23931128,23931641-23931747,
23931832-23931899,23932068-23932097,23932357-23932460,
23932558-23932662,23932815-23932904,23932982-23933057,
23933292-23933361,23933799-23933869,23933945-23934035,
23934192-23934319,23934547-23934675,23934762-23934902
Length = 481
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 113 TISEAHYLPELGGPHDEALLDSLVEKGCEDNQ-ILGQTLDKLAHLVHGA 256
++ E + PE+ PH L L+ K E + + G+TL KL L H +
Sbjct: 404 SLMENQHCPEVADPHGSVHLSGLLHKAAEICEGLSGRTLRKLPFLAHAS 452
>04_04_1291 -
32404716-32404946,32405377-32405478,32405731-32405910,
32406023-32406100,32407501-32407620,32407713-32407805,
32408369-32408443,32408673-32408828,32408957-32409040,
32409773-32410450,32411814-32411877,32411968-32411978
Length = 623
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +2
Query: 425 EHQSSVESYMSDEVFVPEPSSDCGLQALSEASVMQATNN-----VNHYTDPIEKSIRDDV 589
EH+S E+Y+ E P+ S D G + V+ + V + I + R
Sbjct: 260 EHKSLAETYLLQE---PDNSKDMGAKESKHDGVISTGTSDDGKIVLDIIEAIHAAERKQA 316
Query: 590 ASSDTMYSEQVSDLQESYESE 652
+ MYSE+ L+E YE E
Sbjct: 317 DADAYMYSEEKRKLKEKYEKE 337
>01_06_0676 + 31101633-31102192,31102450-31102807,31103033-31103305
Length = 396
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Frame = +2
Query: 134 LPELGGPHDEALLDSLVEKGCEDNQILGQTLDK------LAHLVHGAAEYAESEEDMLLN 295
LPE GGP EAL + V GC Q++G +D+ L H+ A A E + +
Sbjct: 95 LPEAGGPVAEALRSAAVAFGC--FQVVGHGVDRSLVSAALRHVAAATARAATPEPEEVEV 152
Query: 296 NG 301
NG
Sbjct: 153 NG 154
>11_06_0003 - 19155407-19155953,19156114-19156148
Length = 193
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Frame = +2
Query: 512 EASVMQATNNVNHYTD------PIEKSIRDDVASSDTMYSEQVSDLQESYESEKHYVEPQ 673
E S +++ N +H+ + P + ++RD+V S D + + +E E E+ E +
Sbjct: 10 EISYIESYTNWSHHGEIPSKQVPNQVTVRDEVVSRDEDFMVVAEEEEEEEEEEEEEEEEE 69
Query: 674 GSIPDQSDDTSTEDEPKD 727
++ ++ E+EP D
Sbjct: 70 EE--EEEEEEEEEEEPAD 85
>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
Length = 1439
Score = 29.1 bits (62), Expect = 3.8
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Frame = +2
Query: 419 QPEHQSSVESYMSDEVFVPEPSSDCGLQALSEASVMQATNNVNHYTDPIEKSIRDDVAS- 595
+ E + E M EV V +D G + T++V + + D+ +
Sbjct: 387 EDEEEGEEEMEMEVEVEVRSDDNDHGNGGIRGEG--GGTDDVAEIEEEELGTDEDETSDD 444
Query: 596 SDTMYSEQVSDLQESYESEKHYVEPQGSIPDQSDDTSTEDEPKDA 730
SD +S++ D +E E E+ E + D DD E+EP DA
Sbjct: 445 SDENFSDEEGDEEELEEEEEEEEEEE----DDDDDDEEEEEPGDA 485
>02_01_0682 + 5064127-5065170,5066234-5066317
Length = 375
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 98 KDLFDTISEAHYLPELGGPHDEALLDSLVEKGCEDNQILGQTLDKLAHLVHGAAEYAESE 277
+DL D S E G PHD+ L + + + + L TL ++ + + + E E
Sbjct: 66 RDLSDASSSG--ARETGDPHDDDPLPQTLARSLDSDGDLSATLHQIVSAMRLSEDEEEEE 123
Query: 278 EDMLL 292
E+ LL
Sbjct: 124 EEELL 128
>11_06_0061 -
19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 554 TDPIEKSIRDDVASSDTMYSEQVSDLQESYESEKHYVEPQGSIPDQSDDTS 706
+ P++ DD DT S + ++ S + +P+G +P+ S+D S
Sbjct: 375 SSPVDVFSSDDEHRHDTESSARRRSIKRSRKEFNATQQPEGMLPEDSEDVS 425
>07_03_0183 -
14822973-14823139,14823232-14823627,14823861-14824005,
14824174-14824380
Length = 304
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -3
Query: 728 HLWVRPQLMCHRFGQVSTPGVLRNVFRIHSSLVNQILVPNTSYRM 594
H+W+ L G + GV ++ N+IL+PN Y +
Sbjct: 107 HIWIAMTLFPRVQGHILKHGVDGSLIYFFPGCTNEILLPNAGYHL 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,488,354
Number of Sequences: 37544
Number of extensions: 361113
Number of successful extensions: 1064
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -