Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1215
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61954-5|AAK29812.1|  575|Caenorhabditis elegans Hypothetical pr...    33   0.28 
AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (...    28   5.9  
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ...    28   5.9  

>U61954-5|AAK29812.1|  575|Caenorhabditis elegans Hypothetical
           protein F41H10.4 protein.
          Length = 575

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 527 QATNNVNHYTDPIEKSIRDDVASSDTMYSEQVSDLQESYESEK 655
           Q   N N      EK + D V   +T Y  +V DL++S+ES+K
Sbjct: 316 QIQQNTNEAAKNHEKLLEDRVLLLETRYQLEVDDLKKSFESDK 358


>AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical
           protein R08F11.1 protein.
          Length = 884

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 179 LVEKGCEDNQILGQTLDKLAHLVHGAAEYAESEEDMLLNNGPVSD 313
           L+E G E  Q+L   L K   +V GA E  + + D ++ N   +D
Sbjct: 603 LIELGSEKGQVLEFFLGKCTKIVDGALECWDKDNDGMIENDGFAD 647


>Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical
           protein C29A12.3a protein.
          Length = 773

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +2

Query: 575 IRDDVASSDTMYSEQVSDL---QESYESEKHYVEPQGSIPDQSDDTSTEDEPKD 727
           IRDD  S D   SEQV ++   QE++ ++K  +E   ++ +  +    EDE ++
Sbjct: 597 IRDDKNSDDATSSEQVLEMYKNQEAFANQK--IEKADAVDEDDEFEEKEDEEEE 648


>Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical
           protein F58G6.1 protein.
          Length = 461

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 536 NNVNHYTDPIEKSIRDDVASSDTMYSEQVSDLQESYE 646
           +N++  T+ +EK++ DD+  + T Y  Q  DL++  E
Sbjct: 96  DNLDIQTNELEKTVCDDLPQTVTQYVNQFPDLKKKIE 132


>Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical
           protein W07G1.5b protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = +2

Query: 473 PEPSSDCGLQALSEASVMQATNNVNHYTDPIEKSIRDDVASSDTMYSEQVSDLQESYESE 652
           P  +   G  A   A+ ++A  +V+    P      +D  + D    E+V D +E   S+
Sbjct: 327 PATAKAPGTPANRSATALEA-KSVSQQPTPESSEEEEDEGNGDEDDDEEVEDDEEDAGSD 385

Query: 653 KHYVEPQGSIPDQSDDTSTEDEPKD 727
           +   EP     ++ +D  TE+E ++
Sbjct: 386 EAEEEPS---DEEEEDEETEEEEEE 407


>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 5
           protein.
          Length = 1434

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/79 (24%), Positives = 29/79 (36%)
 Frame = +2

Query: 488 DCGLQALSEASVMQATNNVNHYTDPIEKSIRDDVASSDTMYSEQVSDLQESYESEKHYVE 667
           + GL  L EA      N   H   P   S+ ++   +        SD++   E E    +
Sbjct: 281 ETGLSPLEEAQRALRANRARH--KPSNVSLAEEAKLAARQRYSNASDIRREEEEEVVEED 338

Query: 668 PQGSIPDQSDDTSTEDEPK 724
           P   +P    D   E+ PK
Sbjct: 339 PAVVVPVLRKDLEVEEAPK 357


>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.4 protein.
          Length = 1393

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/79 (24%), Positives = 29/79 (36%)
 Frame = +2

Query: 488 DCGLQALSEASVMQATNNVNHYTDPIEKSIRDDVASSDTMYSEQVSDLQESYESEKHYVE 667
           + GL  L EA      N   H   P   S+ ++   +        SD++   E E    +
Sbjct: 281 ETGLSPLEEAQRALRANRARH--KPSNVSLAEEAKLAARQRYSNASDIRREEEEEVVEED 338

Query: 668 PQGSIPDQSDDTSTEDEPK 724
           P   +P    D   E+ PK
Sbjct: 339 PAVVVPVLRKDLEVEEAPK 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,366,447
Number of Sequences: 27780
Number of extensions: 302163
Number of successful extensions: 987
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)