Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1214
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    27   2.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   3.8  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   5.0  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   5.0  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       25   5.0  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    25   6.7  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    25   6.7  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   8.8  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   8.8  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   8.8  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   8.8  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   8.8  

>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 79  FDYKQSTASMDIFSQSSIDELRAWTEKLD 165
           F  KQ      +FS +++DEL  W  K++
Sbjct: 645 FSVKQKNQRTHVFSVTNVDELNDWLVKIN 673


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 226 CYGDVERTKSCIEKY--YSCRKNAPEFFDNRYLHLEDMKNAQQVLEFSFLPGKSCDGYDI 399
           CY  + R++SC  KY  YSCR                 +N+   LEF+ LPG+S D + I
Sbjct: 403 CYSYICRSRSCPSKYQCYSCRC---------------ARNSS--LEFTSLPGQSSDTWSI 445

Query: 400 VYH 408
            ++
Sbjct: 446 FWN 448


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 67  VDLEFDYKQSTASMDIFSQS 126
           +DLEFD+ ++T +  I+S+S
Sbjct: 499 IDLEFDHSKATVNEPIYSKS 518


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 309 SISPFGRYEKRATSFRILISAREVL 383
           +I PFG +++ A   R   +ARE+L
Sbjct: 369 NIDPFGSFDENAQVMRYSANAREIL 393


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 348 SFRILISAREVLRRLRYRLPQAPRYRSVEIQ 440
           +FR+ I+++E L  L  R P+ P  R  +IQ
Sbjct: 79  AFRLQIASKEFLNELVRRFPERPPSRLNKIQ 109


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 106 MDIFSQSSIDELRAWTEKLDKSKYVPKDLSDKQILLFYNACYGDVERTKSCIEKYY 273
           MD    S+I+ L    + +  S    KD   +Q+ +F N  + D+E +    E YY
Sbjct: 1   MDFTPNSAINHLNLKFDDVPVSDDFSKDDLAEQLNVFTNPYFLDLEPSSMLSEGYY 56


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 316 LHLEDMKNAQQVLEFSFLPGKSCDG 390
           L +++ K+ QQV E+SF+P K  DG
Sbjct: 69  LEIQNEKSKQQV-EYSFIPLKQDDG 92


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
 Frame = +1

Query: 115 FSQSSIDELRAWTEKLDKSKYVPK----------DLSDKQILLFYNACYGDVERTKSCIE 264
           FS + IDE      K  KSK  PK          D  DK+     N+  G   RT     
Sbjct: 115 FSYTEIDEHEIPIPKKRKSKPAPKQKKSVASDDEDAYDKRHRFSINSASGTEIRTSLRSS 174

Query: 265 KYYSCRKNAPEFFDN 309
           K  S   N  EF+D+
Sbjct: 175 KGKSVNYNEQEFYDD 189


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 262 EKYYSCRKNAPEFFDNRYLHLEDMKNAQQVLEF 360
           E Y+ C +    FF   +LH+E  K ++ +  F
Sbjct: 384 EAYFDCPQWVNYFFHAGHLHIEGQKMSKSLKNF 416


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -2

Query: 211  TKSVYPINLLAHIWIYLTFQSKLLVHLCCFEKICPSTQWTVYNQILNPRAFLI*LRVYLV 32
            TKSVY +  L H  +      K+ +    FE IC      V N  +      I L+V  +
Sbjct: 1474 TKSVYWLLTLLHAGLQTNQDLKIYLRRHVFEMICTLYNSCVVNSEIRTLIEKILLKVVAL 1533

Query: 31   SG 26
             G
Sbjct: 1534 GG 1535


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 109 DIFSQSSIDELRAWTEKLDKSKYVPKDLSDKQILLFYNACYGDVER 246
           DI    S  ++R  T+K    +Y  K L  K I+      Y ++ER
Sbjct: 58  DIIGDGSFSKVRRATDKKSWKEYAIKVLDKKYIVKENKVKYVNIER 103


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 333 HIFQMEISIVKKFRCILPTRII 268
           HIF+  ISI++    ++P+R+I
Sbjct: 425 HIFRGHISIIRCLEILVPSRLI 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,786
Number of Sequences: 5004
Number of extensions: 43026
Number of successful extensions: 145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)