Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1214
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0858 - 21108283-21108387,21108820-21108889,21109490-211096...    29   2.2  
07_01_0151 - 1086632-1086672,1087112-1088177                           29   2.9  
01_01_0171 + 1446221-1446902,1447040-1447221,1447339-1447409,144...    29   2.9  
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879...    28   5.1  
07_01_0431 + 3283252-3283274,3283684-3283819,3285839-3286682,328...    27   8.8  
06_01_0036 + 364316-365758                                             27   8.8  
05_05_0194 + 23139587-23140249                                         27   8.8  

>10_08_0858 -
           21108283-21108387,21108820-21108889,21109490-21109646,
           21109930-21110062,21110409-21110583,21113353-21113453,
           21113620-21113706,21115871-21115931,21116114-21116178,
           21116534-21117631
          Length = 683

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 369 AREVLRRLRYRLPQAP 416
           ARE+L RL YRLP AP
Sbjct: 54  AREILARLNYRLPAAP 69


>07_01_0151 - 1086632-1086672,1087112-1088177
          Length = 368

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 343 QQVLEFSFLPGKSCDGYDIVYHRLHDTDPSKYSLETGV 456
           Q  L F    GK   GYDI  H L + DP     E G+
Sbjct: 213 QDTLYFRCERGKRILGYDIGRHELSEIDPPPLGHEVGI 250


>01_01_0171 +
           1446221-1446902,1447040-1447221,1447339-1447409,
           1447480-1447486,1447530-1447619,1447694-1447981,
           1448121-1448333,1448860-1449087
          Length = 586

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 46  EVKLKMPVDLEFDYKQSTASMDIFSQSSIDELRAWTEKLDK 168
           EVK +   +LE  Y ++TAS++   +    +L+A+ E++ K
Sbjct: 191 EVKKRHVEELESQYNETTASLERVMEQREQQLQAYNEEIRK 231


>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
            23288510-23289353,23289468-23290120,23290573-23290676,
            23290898-23291000
          Length = 1724

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
 Frame = +1

Query: 1    RSGSVVKIDRKLNKREVKLKMPVDL-EFDYKQSTASMDIFSQSSIDELRAWTEKLDKSKY 177
            R G  +KI     +  +     ++L   ++ Q+T    +    S D+L A  EK++K   
Sbjct: 1402 RKGMEIKIQEYQERGNMLKAKEIELLSLEHAQNTTERGMTEVISKDQLEALVEKINKLTS 1461

Query: 178  VPKDLSDKQILLFYNACYGDVERTKSCIEKYYSCRKNAPEF-FDNRYLHL 324
              +    +++ +        +E+  S I++ Y+ R       ++N  LHL
Sbjct: 1462 SAESHLQRELAM----SSSPIEKLFSLIDEVYALRHEVDTLRYENEDLHL 1507


>07_01_0431 +
           3283252-3283274,3283684-3283819,3285839-3286682,
           3286785-3286856,3286906-3286937,3287020-3287433
          Length = 506

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 283 SYKNNIFLYMTLFFQHHHNKRCKTT 209
           S ++ +F + T+   HHH KRC T+
Sbjct: 84  SRESLVFRFYTVLSMHHHIKRCWTS 108


>06_01_0036 + 364316-365758
          Length = 480

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 366 SAREVLRRLRYRLPQAP 416
           SARE+L RL +RLP  P
Sbjct: 144 SAREILARLNHRLPSLP 160


>05_05_0194 + 23139587-23140249
          Length = 220

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 118 SQSSIDELRAWTEKLDKSKYV-PKDLSDKQILLFYNACY 231
           ++ S+ + R WTE +D+S +  P  LSD    L  N  Y
Sbjct: 51  ARRSLSDRRPWTELVDRSAFSRPDSLSDATSRLRRNLAY 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,532,012
Number of Sequences: 37544
Number of extensions: 242187
Number of successful extensions: 600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)