Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1214
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    32   0.21 
AF016676-6|AAG24108.1|  354|Caenorhabditis elegans Seven tm rece...    29   1.5  
Z75549-3|CAA99915.1|  301|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U23452-8|AAR12973.1|  231|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z83237-3|CAB05787.1|  460|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z92782-10|CAE17812.1|  377|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z81570-5|CAB04605.2|  321|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AL132949-20|CAB70111.2|  165|Caenorhabditis elegans Hypothetical...    27   7.9  
AF078785-11|AAC27097.2|  294|Caenorhabditis elegans Hypothetical...    27   7.9  
AF039716-3|AAB96736.1|  515|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    27   7.9  

>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 211  TKSVYPINLLAHIWIYLTFQSKLLVHLCCFEKICPSTQWT 92
            + S++    LA +W  ++    + + +CCFE     T+WT
Sbjct: 4908 SNSIFEYLKLAKVWSLISRNQNVFIIICCFENGTSHTEWT 4947


>AF016676-6|AAG24108.1|  354|Caenorhabditis elegans Seven tm
           receptor protein 253 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -2

Query: 205 SVYPI-NLLAHIWIYLTFQSKLLVHLCCFEKICPSTQWTVYNQI 77
           ++YP+ N L  I+I  +++  ++  LCC +KI P +   V NQ+
Sbjct: 302 ALYPVLNPLPTIFIVTSYRKAVIDLLCCRKKIVPLSTAEVTNQM 345


>Z75549-3|CAA99915.1|  301|Caenorhabditis elegans Hypothetical
           protein T19C4.3 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -2

Query: 310 DCQKIQVHSSYKNNIFLYMTLFFQHHHNKRCKTTKSVYPINLLAHIWIYLTFQ 152
           DC  + V+  + NN  +       +H      +T ++  +N L+ +W Y TF+
Sbjct: 71  DCLMVPVYMFFDNNFPMNFFTAMSYHMAYVQYSTTALISVNRLSVLWNYKTFE 123


>U23452-8|AAR12973.1|  231|Caenorhabditis elegans Hypothetical
           protein R07G3.7b protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 193 SDKQILLFYNACYGDVERTKSCIEKYYSCRKNAPEFFDNRYLH 321
           S  Q  L  N  Y D +  ++  E YY  R +    FD RY H
Sbjct: 96  SYNQFQLHLNEDYNDGKCNRALPEYYYVQRHDRTHMFDKRYKH 138


>U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical
           protein R07G3.7a protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 193 SDKQILLFYNACYGDVERTKSCIEKYYSCRKNAPEFFDNRYLH 321
           S  Q  L  N  Y D +  ++  E YY  R +    FD RY H
Sbjct: 231 SYNQFQLHLNEDYNDGKCNRALPEYYYVQRHDRTHMFDKRYKH 273


>Z83237-3|CAB05787.1|  460|Caenorhabditis elegans Hypothetical
           protein R06B9.3 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 226 KRCKTTKSVYPINLLAHIWIYLTFQSKLLVHLCCFEK 116
           KRC T   +  +N++ H    +  Q+   +  CCF+K
Sbjct: 147 KRCITVSPLIDLNVIPHALTQINDQASENLGCCCFKK 183


>Z92782-10|CAE17812.1|  377|Caenorhabditis elegans Hypothetical
           protein F14F8.10 protein.
          Length = 377

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
 Frame = +1

Query: 358 FSFLPGKSCDGYDIVYHRL-HDTDPSKYSLETGV---KLLFMTLDACLYKRGPS 507
           F ++P K CDG+   Y +L + T+ ++ S + G+   K++F+ ++   +K  PS
Sbjct: 199 FKWVPPKDCDGFPPNYSQLWYSTELTELSGKAGIVTTKIMFL-VEGIFFKIIPS 251


>Z81570-5|CAB04605.2|  321|Caenorhabditis elegans Hypothetical
           protein K12G11.5 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 259 YMTLFFQHHHNKRCKTTKSVYPINLL 182
           ++ ++F HH+NK C  T + +   LL
Sbjct: 115 FIAIYFPHHYNKLCGYTATAFISTLL 140


>Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical
           protein K01D12.2 protein.
          Length = 529

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 346 VARFSYLPNGDIDCQKIQVHSSYKNN 269
           V ++SY P    D   + +HSSY+NN
Sbjct: 39  VPQYSYSPATHTDIPLLFIHSSYQNN 64


>AL132949-20|CAB70111.2|  165|Caenorhabditis elegans Hypothetical
           protein Y53F4B.23 protein.
          Length = 165

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 292 PEFFDNRYLHLEDMKNAQQVLEF-SFLPGKSCDGYDIVY-HRLHDTDPSK 435
           P F D +   LED+KN +  L   S + GK  +  D  + H ++D + SK
Sbjct: 50  PTFSDLQKTQLEDIKNDENALALKSSMVGKGTEESDAPFAHGVNDGETSK 99


>AF078785-11|AAC27097.2|  294|Caenorhabditis elegans Hypothetical
           protein C04E12.12 protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 226 KRCKTTKSVYPINLLAHIWIYLTFQSKLLVHLCCFEK 116
           KRC T   +  +N++ H    +  Q+   +  CCF K
Sbjct: 147 KRCITVSPLIDLNVIPHALTQINDQASENLGCCCFTK 183


>AF039716-3|AAB96736.1|  515|Caenorhabditis elegans Hypothetical
           protein W03G9.2 protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 37  NKREVKLKMPVDLEFDYKQSTASMDIFSQSSIDELRAWTEKLDKSKYVPKDLSD 198
           N R+   + P++ E   K+  A  +++SQ+ ID+ R  +     +K V  D  D
Sbjct: 5   NARDSDDESPLESEEHLKRFFAGRNLYSQTKIDDARKKSHDAKYAKEVEWDAKD 58


>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 226 KRCKTTKSVYPINLLAHIWIYLTFQSKLLVHLCCFEK 116
           KRC T   +  +N++ H    +  Q+   +  CCF K
Sbjct: 147 KRCITVSPLIDLNVIPHALTQINDQASENLGCCCFTK 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,370,430
Number of Sequences: 27780
Number of extensions: 239066
Number of successful extensions: 853
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)