Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1214
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.9  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   2.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   2.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   2.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   5.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.9  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 415 HDTDPSKYSLETGVKLLFMTLDACLYK 495
           H   P +Y + + +K+LF+    CL +
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPCLLR 308


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 415 HDTDPSKYSLETGVKLLFMTLDACLYK 495
           H   P +Y + + +K+LF+    CL +
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPCLLR 308


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 415 HDTDPSKYSLETGVKLLFMTLDACLYK 495
           H   P +Y + + +K+LF+    CL +
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPCLLR 308


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 415 HDTDPSKYSLETGVKLLFMTLDACLYK 495
           H   P +Y + + +K+LF+    CL +
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPCLLR 308


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 415 HDTDPSKYSLETGVKLLFMTLDACLYK 495
           H   P +Y + + +K+LF+    CL +
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPCLLR 308


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 415 HDTDPSKYSLETGVKLLFMTLDACLYK 495
           H   P +Y + + +K+LF+    CL +
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPCLLR 308


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 415 HDTDPSKYSLETGVKLLFMTLDACLYK 495
           H   P +Y + + +K+LF+    CL +
Sbjct: 350 HHRTPDRYVMPSWIKMLFLQWLPCLLR 376


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 415 HDTDPSKYSLETGVKLLFMTLDACLYK 495
           H   P +Y + + +K+LF+    CL +
Sbjct: 350 HHRTPDRYVMPSWIKMLFLQWLPCLLR 376


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
 Frame = +1

Query: 256 CIEKYYSCRKNAPE-----FFDNRYLHLEDMK 336
           C +K+Y C KN+ +     F    Y +L D K
Sbjct: 91  CDDKFYDCLKNSADTISSYFVGKMYFNLIDTK 122


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
 Frame = +1

Query: 256 CIEKYYSCRKNAPE-----FFDNRYLHLEDMK 336
           C +K+Y C KN+ +     F    Y +L D K
Sbjct: 96  CDDKFYDCLKNSADTISSYFVGKMYFNLIDTK 127


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
 Frame = +1

Query: 256 CIEKYYSCRKNAPE-----FFDNRYLHLEDMK 336
           C +K+Y C KN+ +     F    Y +L D K
Sbjct: 96  CDDKFYDCLKNSADTISSYFVGKMYFNLIDTK 127


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +1

Query: 328 DMKNAQQVLEFSFLPGKSCDGYDIVYHRLHDTDPSKYSLETG 453
           D+K    + + +  P ++  GYDI    +   +     L TG
Sbjct: 782 DVKTTLNISDIALYPSQTTHGYDIYASSIDKENILFLDLSTG 823


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 358 FSFLPGKSCDGYDIVYHRLHDTDPSKYSLETGV 456
           +S+   K CDG   VY    D     + L+TG+
Sbjct: 109 WSYNDVKYCDGLTSVYRMQVDKCGRLWILDTGI 141


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 25  DRKLNKREVKLKMPVDLEFDYKQSTASMDIFSQSSIDELR 144
           D+KL K  ++ K  + ++  + +    MD+  +  I+E R
Sbjct: 429 DQKLEKHLIEYKKMLKIKRLFGKDRKIMDMVREKIIEEKR 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,242
Number of Sequences: 438
Number of extensions: 2966
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)