Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1213
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   8.6  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.6  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   8.6  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.6  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   8.6  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   8.6  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 312 NKIEPRSYSIIPCTKYSSSIFSP 244
           N ++P+S +++P T +  SI SP
Sbjct: 29  NPVKPQSSNVVPGTSHIGSIKSP 51


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = -1

Query: 211 CRPTSTLTEEHRDRILILNRRFLERRLTDDMLRKRVSITADRCTDSAAHKCNYELFNRNN 32
           C P  ++ +   +RILI  R F             + I  D     AA KC +E      
Sbjct: 32  CNPCYSIEKLKSNRILIAVRLF---SFAFSSFSTTLRILRDFII--AASKCEFEKIWSTT 86

Query: 31  FSIRYWSWNY 2
           FSI + S+N+
Sbjct: 87  FSISFLSFNF 96


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 164 DIEPAFFRTPAHRRYAPQTCQYHRGSVHRQRGAQMQ 57
           DI P  +    + +Y P+   Y     H Q GA +Q
Sbjct: 193 DINP--YNLSPYSQYGPEGTAYSNAQAHHQDGAPLQ 226


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +1

Query: 379 VKFLDRXKTNISESICQRCFINQERKLEVRRRLD 480
           +K+ +R + +    +C +C+   E K++V + +D
Sbjct: 158 LKYSNRLQASNDTGVCVKCYGGMETKVQVCQAID 191


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 418 SICQRCFINQERKLEVRRRLDTGLVL 495
           SIC  C IN+  K ++ + +  GL+L
Sbjct: 509 SICTSCSINESLKTKLPKLISFGLLL 534


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 254 FLARFEHSNLFKVKLSAHLDTHRRAPR*DFD 162
           F A  +   L +  LS H+ TH  AP   FD
Sbjct: 143 FEAGIDSPLLCQASLSTHVKTHNNAPLTSFD 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,134
Number of Sequences: 5004
Number of extensions: 35641
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)