Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1213
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99268-1|CAB16466.1|  715|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81573-4|CAB04627.1|  715|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z49908-10|CAA90103.1|  715|Caenorhabditis elegans Hypothetical p...    28   4.5  
EU068465-1|ABU49430.1|  715|Caenorhabditis elegans PRO-2 protein.      28   4.5  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z99268-1|CAB16466.1|  715|Caenorhabditis elegans Hypothetical
           protein C07E3.2 protein.
          Length = 715

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -3

Query: 350 VIPINHYLGVLKPTK*NRDHILLFHARNIQAAFLARFEHSNLFKVKLSAHLDTHRRAPR* 171
           V+PINH +  +  T  N DH  LF     +    +RF    L +  +  + +   RA R 
Sbjct: 555 VLPINHRISAILETMKNGDHAHLFRGFQTKLKEHSRFVLDVLARKSVDINDEMQVRAVRF 614

Query: 170 DFD 162
           D +
Sbjct: 615 DLN 617


>Z81573-4|CAB04627.1|  715|Caenorhabditis elegans Hypothetical
           protein C07E3.2 protein.
          Length = 715

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -3

Query: 350 VIPINHYLGVLKPTK*NRDHILLFHARNIQAAFLARFEHSNLFKVKLSAHLDTHRRAPR* 171
           V+PINH +  +  T  N DH  LF     +    +RF    L +  +  + +   RA R 
Sbjct: 555 VLPINHRISAILETMKNGDHAHLFRGFQTKLKEHSRFVLDVLARKSVDINDEMQVRAVRF 614

Query: 170 DFD 162
           D +
Sbjct: 615 DLN 617


>Z49908-10|CAA90103.1|  715|Caenorhabditis elegans Hypothetical
           protein C07E3.2 protein.
          Length = 715

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -3

Query: 350 VIPINHYLGVLKPTK*NRDHILLFHARNIQAAFLARFEHSNLFKVKLSAHLDTHRRAPR* 171
           V+PINH +  +  T  N DH  LF     +    +RF    L +  +  + +   RA R 
Sbjct: 555 VLPINHRISAILETMKNGDHAHLFRGFQTKLKEHSRFVLDVLARKSVDINDEMQVRAVRF 614

Query: 170 DFD 162
           D +
Sbjct: 615 DLN 617


>EU068465-1|ABU49430.1|  715|Caenorhabditis elegans PRO-2 protein.
          Length = 715

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -3

Query: 350 VIPINHYLGVLKPTK*NRDHILLFHARNIQAAFLARFEHSNLFKVKLSAHLDTHRRAPR* 171
           V+PINH +  +  T  N DH  LF     +    +RF    L +  +  + +   RA R 
Sbjct: 555 VLPINHRISAILETMKNGDHAHLFRGFQTKLKEHSRFVLDVLARKSVDINDEMQVRAVRF 614

Query: 170 DFD 162
           D +
Sbjct: 615 DLN 617


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 34  CCG*KARSCICAPRCRC 84
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK265.7 protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 187 EEHRDRILILNRRFLERRLTDDMLRKRV 104
           EE R+R  +  RR  ERRL +D + +R+
Sbjct: 294 EEERERYRMERRRAEERRLQEDTILRRI 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,583,147
Number of Sequences: 27780
Number of extensions: 212579
Number of successful extensions: 490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)