Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1212
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    26   7.1  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   7.1  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    26   7.1  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   9.4  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   9.4  

>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 609 LNLATPSRSEFVLMDPQNTIDYLNN 683
           + L  P R+E+ L DP  T D  N+
Sbjct: 164 IGLGPPKRAEYTLTDPSKTSDTKNS 188


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 474 NKTSVRSAVNTVKAVVEANKSCLRRNVMNASK 569
           N TSV +AVNT  +   A +S   RN   AS+
Sbjct: 177 NSTSVPNAVNTEISAARATESEASRNQTKASR 208


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 465 FKVNKTSVRSAVNTVKAVVEANKSCLRRNVMNASKLTEKKRLWNKRKCLNLATPSRS 635
           F ++K +  S++   + +   NK+ LRR + + ++L E   L   R     +  SRS
Sbjct: 328 FSIDKLTKSSSIVAFEKLYFLNKNYLRRAISDVNRLDELIELVQPRLIQKFSHSSRS 384


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 540 LRRNVMNASKLTEKKRLWNKRKCLNLATPSRSEFVL 647
           LR+ ++  +K  E  + W  +  L +  P+RSE V+
Sbjct: 537 LRKYLLQTNKARENIKFWRPQILLLINNPNRSENVI 572


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -2

Query: 111 YVLPLIGHDW--HPEHMIAASY*IQLIIQWYY 22
           Y  P     W  HP H++       L++QW+Y
Sbjct: 641 YTFPFTIITWLMHPTHLLLVVMFSMLVLQWWY 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,536
Number of Sequences: 5004
Number of extensions: 49053
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)