Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1212
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0555 - 34693067-34693196,34693450-34693688,34693956-346940...    28   7.4  
10_07_0151 + 13430925-13431240,13431858-13432015,13432996-134330...    28   9.7  
01_02_0098 - 11087875-11089110,11091744-11092022                       28   9.7  

>03_06_0555 -
           34693067-34693196,34693450-34693688,34693956-34694033,
           34694057-34694131,34694667-34694831,34695101-34695151,
           34695250-34695300,34695462-34695533,34695736-34695948,
           34696064-34696214,34696376-34696490,34696665-34696748,
           34696841-34696964,34697064-34697145,34697238-34697299,
           34697787-34697840,34697944-34698147
          Length = 649

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 510 KAVVEANKSCLRRNVMNASKLTEKKRLWNKRKCLNLATPSRSEFV 644
           K + E+ K   +RN     +LT    LW K +C N+++  RS+ V
Sbjct: 68  KEMAESRKKKRKRNYSLEKELTV---LWEKMRCHNVSSTERSKLV 109


>10_07_0151 +
           13430925-13431240,13431858-13432015,13432996-13433042,
           13433818-13433881,13434795-13435243,13435618-13435848,
           13436181-13436226
          Length = 436

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 265 GDIPKRTLFEFNFLFLCPFLV 203
           G   +RTL EF  +FLCP LV
Sbjct: 35  GPRERRTLLEFGSIFLCPRLV 55


>01_02_0098 - 11087875-11089110,11091744-11092022
          Length = 504

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 537 CLRRNVMNASKLTEKKRLWNKRKCLNLATPSRSEFVLMDPQNTID 671
           CL  +  N+  L+E KR+W   K       +RS  V++     +D
Sbjct: 284 CLLSHYANSGNLSEVKRIWESLKSAFKKCTNRSYLVMLKALKKLD 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,933,256
Number of Sequences: 37544
Number of extensions: 260928
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)