Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1211
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 41 0.001
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 40 0.002
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 39 0.004
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 34 0.11
11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542... 33 0.26
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 30 2.4
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 29 4.2
11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158... 28 9.7
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371... 28 9.7
07_03_1471 + 26751684-26752307 28 9.7
06_03_1209 + 28434676-28435242 28 9.7
04_04_0555 - 26210346-26211458,26211530-26211719,26211826-262119... 28 9.7
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 40.7 bits (91), Expect = 0.001
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 3/189 (1%)
Frame = +2
Query: 200 ADPE-HTELVDREVERRASLPPSDAL-PPITADEVRDAIHNLQPRKAPGSDGIHNRALKF 373
ADP + E V R + + + ++ L +E+ AI + P K+PG DG R +
Sbjct: 862 ADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFYQR 921
Query: 374 LPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIY 553
L + + + + P + ++ I K +P + YRPISL + + K+
Sbjct: 922 NWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPI-DLKDYRPISLCNVVYKVV 980
Query: 554 ERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHI-LIGLNRRKQIPTGALFF 730
+ L RL + + ++ EQ F E I N++ A
Sbjct: 981 SKCLVNRLRPIL--DDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKL 1038
Query: 731 DIAKAFDKV 757
D++KA+D+V
Sbjct: 1039 DLSKAYDRV 1047
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 39.9 bits (89), Expect = 0.002
Identities = 36/100 (36%), Positives = 47/100 (47%)
Frame = +2
Query: 458 ADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSK 637
A ++ I KPGK N YRPISL + KI ++L RL V I +D Q GF
Sbjct: 971 AYIVLIQKPGKE-NTVDGYRPISLQNCSVKILSKVLATRL-QRVFLRMIHLD-QTGFLKG 1027
Query: 638 HSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKV 757
+ + TE LI R++ T + D KAFD V
Sbjct: 1028 RCISENLIYATE--LIQACYRRKCQTIIVKLDFTKAFDSV 1065
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +2
Query: 278 PITADEVRDAIHNLQPRKAPGSDG--IHN--RALKFLPVQLIAMLATILNAAMTH 430
P + DE++DA+ + P KAPG DG +HN KF P+ L +L I + + +
Sbjct: 152 PYSDDEIKDALFQMGPTKAPGPDGRKVHNPEHLSKFRPISLCNVLYKIASKVLAN 206
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 34.3 bits (75), Expect = 0.11
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Frame = +2
Query: 482 PGKPTNET-SSYRPISLLSTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQV 658
P K + ET + +RPISL+ KI +LL RL + K++ D +GF K +Q
Sbjct: 377 PKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVIL--KLVSDNHYGF-IKGKTIQDC 433
Query: 659 HRLT-EHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLI 775
E+I +++I L D KAFD + H+ ++
Sbjct: 434 PAWPFEYIHQCQQSKREIV--LLKLDFEKAFDTIEHSAIL 471
>11_04_0401 -
17251759-17252208,17252545-17253022,17254235-17254290,
17254489-17255019
Length = 504
Score = 33.1 bits (72), Expect = 0.26
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Frame = +2
Query: 200 ADPE-HTELVDREVERRASLPPSDAL-PPITADEVRDAIHNLQPRKAPGSDG----IHNR 361
ADP E V R ++++ + +D L I +E+ AI + P K+ G +G I+ R
Sbjct: 359 ADPSLDPECVTRLIQKKVTAAMNDKLCEDIKEEEIALAIFQIGPLKSLGPNGFPARIYQR 418
Query: 362 ALKFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTI 541
+ ++ + I +T P + ++ I +P + +RPISL + +
Sbjct: 419 NRGIMKQDIVNPVTKIFQTGLT----PMGVNDTAIVLILMSDQPV-DLKDFRPISLCNVV 473
Query: 542 GKIYERLLRKRL 577
K+ + L RL
Sbjct: 474 YKVVFKCLVNRL 485
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 29.9 bits (64), Expect = 2.4
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
Frame = +2
Query: 197 HADPEHTELVDREVE-RRASLP--PSDALPPITADEVRDAIHNLQPRKAPGSDGIHNRAL 367
H D EHTE V VE A P PS++ ++ V + A G +L
Sbjct: 360 HHDQEHTENVKNNVELTSADTPSSPSNSASTGNSEAVYQLVSMFAALAAQGDRAA--GSL 417
Query: 368 KFLPVQLIA-MLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIG 544
+ L + A +LA ++ M H P E D G+P+ SS SLLS
Sbjct: 418 QILSSSIAADLLAEVVMVNMQH--LPVSHPEVDQQQSPSAGQPSGAPSS----SLLSACF 471
Query: 545 KIYERLLRK 571
+ E LL++
Sbjct: 472 PLLESLLKR 480
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 29.1 bits (62), Expect = 4.2
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +2
Query: 293 EVRDAIHNLQPRKAPGSDGIHNRAL-KFLPV--QLIAMLATILNAAMTHCIFPAVWKEAD 463
EV + I +QP KAP DGI+ L K P+ Q LA +A T + P ++
Sbjct: 226 EVDNLIKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTD-LQPI--NKSF 282
Query: 464 VIGIHKPGKPTNETSSYRPISLL 532
+ + K P + YRPISL+
Sbjct: 283 ITLVPKKSSP-ETVNDYRPISLM 304
>11_05_0079 +
18914668-18914753,18915123-18915338,18915829-18915895,
18916656-18916723,18916999-18917125,18918240-18918339,
18918405-18918433,18918678-18918730,18919246-18919732
Length = 410
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 504 VSFVGLPGLCIPITSASFHTAGKMQCVIAAFKIVANIAISWTGKNFSARLWMPSE 340
VS V L G + T+ S + + I+++I ISW K +S+ L +P E
Sbjct: 327 VSIVSLAGAAVASTTGS-EKSRIYSYLFPVLGIMSSILISWRIKQYSSALVIPEE 380
>08_01_0418 -
3716226-3716279,3716531-3716581,3716656-3716751,
3717037-3717194,3717303-3717417,3717511-3717564,
3717843-3717950,3718494-3718583,3718818-3718856,
3718993-3719172,3719264-3719576,3719659-3719834
Length = 477
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 269 ALPPITADEVRDAIH--NLQPRKAPGSDGIHNRALKFLPVQLIAMLATILN 415
+ PP+T +++ +A+H L P ++ I N LP + LAT+++
Sbjct: 6 SFPPLTPEQIAEALHTYGLAPTANLRAEDIANPQPDLLPAVISNFLATVVD 56
>07_03_1471 + 26751684-26752307
Length = 207
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 345 SEPGAFLGWRLWIASLTSSAVMGGNASEGGREALRS 238
S P + + SLTS+ V G S GGR +RS
Sbjct: 5 SNPSLIVAAIFLVISLTSATVANGGRSGGGRRLVRS 40
>06_03_1209 + 28434676-28435242
Length = 188
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 2 WHSYLEQLAPSHQAYWRLARTLKSETTATMPPLLRPSGQPP 124
W + + +AY AR+L+ T T PL PS PP
Sbjct: 42 WLGTFDSAEVAARAYDDAARSLRGPTARTNFPLAAPSAPPP 82
>04_04_0555 -
26210346-26211458,26211530-26211719,26211826-26211960,
26212072-26212169,26212262-26212425,26213558-26214032
Length = 724
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 395 MLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIG 544
++ T + + C+F +K D IGI P + +R I++L G
Sbjct: 545 VIGTAMGCVIAPCVFWLFYKAFDNIGISGSDYPAPNAAVFRSIAILGVDG 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,842,662
Number of Sequences: 37544
Number of extensions: 489415
Number of successful extensions: 1548
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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