Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1208
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    27   1.2  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.2  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   2.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   6.6  

>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 223 SSIDSSKRRPKRHERALEKGLTEENQKL 306
           +SID + RRP R E+ +E G+ +++ +L
Sbjct: 426 NSIDEALRRPGRLEKEIEIGIPDKSARL 453


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 109 DSNTSPSKSIASQNLPLDRKRAH 177
           +S T+P+K ++  N PL R R H
Sbjct: 10  NSTTTPTKEVSHLNFPLKRPRLH 32


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 158  WIGNVLTEKPTERSGEKLSGLSVP*TVQK 244
            W    LTEKP E  GE    L  P  VQ+
Sbjct: 982  WQPKKLTEKPAETKGEDEEALLPPEVVQR 1010


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +3

Query: 129  QEYCFAESATGSETCSLKSQLRDP---ARNSVGYQFHRQFKK 245
            +E+C  E  T  +  SLK    DP   A +S+G  +H  F K
Sbjct: 1017 KEFCLTEGTTFDDLASLKHFYEDPQIVACSSLGV-YHSIFNK 1057


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,466,704
Number of Sequences: 5004
Number of extensions: 26088
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)