Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1208
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754     31   0.30 
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385...    29   2.1  
06_01_0385 - 2766467-2766562,2766596-2766754                           28   3.7  

>11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754
          Length = 203

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 115 NTSPSKSIASQNLPLDRKRAH*KAN*EIRRETQWAISSIDSSKRRPKRHERALEKGLTEE 294
           N+   K    + + + RKR H +   +I +E + A+        R ++    LEK L EE
Sbjct: 73  NSEEIKHEIQRRIEVGRKRIHEEVLVQIEKEKEAALVEAQHKAERERKEREELEKKLEEE 132

Query: 295 NQK 303
            +K
Sbjct: 133 RKK 135


>10_08_0614 -
           19238064-19238132,19238381-19238407,19238436-19238510,
           19238637-19239317,19239423-19239554,19239676-19239723,
           19239828-19239878,19240015-19240134,19241121-19241261,
           19241701-19241865,19241981-19242160,19242314-19242445,
           19242536-19242643,19242779-19242883,19243217-19243321,
           19243407-19243463,19243991-19244010,19244299-19244377,
           19245021-19245080,19245562-19245615,19246535-19246600,
           19246938-19246990,19247361-19247450,19248152-19248249,
           19248348-19248721
          Length = 1029

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 208 TQWAISSIDSSKRRPKRHERALEKGLTEENQKLIY*GQMSDKEVLIT 348
           T+  I +++   R  +RH RALE+ L E  +  +    M D +  IT
Sbjct: 626 TKNQIDNLEREIREKRRHMRALEQKLMESGEASVANASMMDMQQTIT 672


>06_01_0385 - 2766467-2766562,2766596-2766754
          Length = 84

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 181 KAN*EIRRETQWAISSIDSSKR--RPKRHERALEKGLTEENQK 303
           KA  E++  T   +SS   +KR  + K HE+ +EKG  EE ++
Sbjct: 14  KAVAEVKASTPPYVSSALEAKRVQKGKEHEKPVEKGKEEERKR 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,171,811
Number of Sequences: 37544
Number of extensions: 158246
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)