Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1208
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    31   0.47 
U34778-1|AAA97606.1|  418|Caenorhabditis elegans sma-2 protein.        28   2.5  
U10327-1|AAC46583.1|  418|Caenorhabditis elegans MAD homolog 1 p...    28   2.5  
M98552-8|AAA28204.3|  418|Caenorhabditis elegans Small protein 2...    28   2.5  
Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
 Frame = -1

Query: 417 YILSTINIRIIKLFRFYSVCISASY*YFLVAHLSLVDQFLIFLR*SFLKGSFVPFRPPF* 238
           YILS+      K+F F       S+  F+V   +  D +LIF     LK  F  +     
Sbjct: 115 YILSSAPPSTWKVFMFSVFIYIPSFTQFIVLMFTAADPYLIF---GMLKSKFPDYTFEIS 171

Query: 237 TVYGTDSPLSFSPDLSV-GFSVSTFPIQWQIL 145
           TV G    LS +   S+   +V  F I   IL
Sbjct: 172 TVTGISDALSPAATFSILNMTVPVFAIYTAIL 203


>U34778-1|AAA97606.1|  418|Caenorhabditis elegans sma-2 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 282 INGGKSEIDLLGTNERQGSINNLRRYILNKTEIT 383
           ING K  + L     R  +I N RR+I N  ++T
Sbjct: 255 INGSKISLGLFSNVNRNATIENTRRHIGNGVKLT 288


>U10327-1|AAC46583.1|  418|Caenorhabditis elegans MAD homolog 1
           protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 282 INGGKSEIDLLGTNERQGSINNLRRYILNKTEIT 383
           ING K  + L     R  +I N RR+I N  ++T
Sbjct: 255 INGSKISLGLFSNVNRNATIENTRRHIGNGVKLT 288


>M98552-8|AAA28204.3|  418|Caenorhabditis elegans Small protein 2
           protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 282 INGGKSEIDLLGTNERQGSINNLRRYILNKTEIT 383
           ING K  + L     R  +I N RR+I N  ++T
Sbjct: 255 INGSKISLGLFSNVNRNATIENTRRHIGNGVKLT 288


>Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical
           protein C55A1.3 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
 Frame = -1

Query: 423 SCYILSTINIRIIKLFRFYSVCISASY*YFLVAHLSLVDQFLIFLR*SFLKGSFVP--FR 250
           +C  L   N  I+ L   Y          +L+ ++S+ +  +I+   S L  S VP  F 
Sbjct: 12  TCAFLGLFNNSILALLILYKSPKKLGNYKYLMMYISIFE--IIY---SLLDFSTVPEIFS 66

Query: 249 PPF*TVYGTDSPLSFSPDLSVGFSVSTFPIQWQILR 142
                +   +  L+  PD+++ F++S FP++ ++L+
Sbjct: 67  KDSAFLITIEKRLAVLPDIALQFALSEFPVKCRLLK 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,860,546
Number of Sequences: 27780
Number of extensions: 137164
Number of successful extensions: 284
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)