Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1207
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591... 30 1.7
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612... 30 2.3
09_04_0637 - 19153136-19153513,19153607-19153759,19153857-191546... 29 4.0
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794... 28 7.1
07_01_0618 + 4577417-4577430,4577838-4577874,4578070-4578173,457... 28 7.1
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 28 7.1
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 28 7.1
08_01_0947 + 9399366-9399568,9399683-9399855,9400745-9401130,940... 28 9.3
03_05_0755 - 27462388-27463140 28 9.3
01_03_0282 - 14580875-14580891,14582126-14585855 28 9.3
>07_01_0770 +
5912412-5912476,5913759-5913779,5914015-5914638,
5915264-5915439,5915526-5916124
Length = 494
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -2
Query: 288 TSKKRNSSRDTREQNVFGFVVSRMLLVVA*TLCITRCVPLVKPSVYFRLS 139
+S R SRD R +N+FGF VS +L+ +A + R + P+VY +S
Sbjct: 18 SSTTRFMSRDIRAKNIFGFSVSLILINLA--SIMERADENLLPAVYKEVS 65
>09_02_0235 +
6122145-6122206,6122408-6122417,6123515-6123549,
6124422-6124842,6124978-6125412
Length = 320
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 246 FVRVCRATNCVFST*PTPERVEVVLAIN 329
FV V ++TNC+ P PE ++ VLAI+
Sbjct: 219 FVPVLQSTNCLMEPLPIPEPIKEVLAIS 246
>09_04_0637 -
19153136-19153513,19153607-19153759,19153857-19154675,
19155068-19155174,19155434-19155548
Length = 523
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +2
Query: 44 YQEVFNLNSMMQAEQLIFHLI-YNNEEAVNVICDNLKYTEGFTSGTQRVIHSVYATTRSI 220
YQE S+ ++ + + Y++E +V + T ++ + + R
Sbjct: 400 YQESMEHESIFESSSHLRQMPEYHHEHLKSVTISGFCSAKSLVELTCHIVENTTSLERLE 459
Query: 221 LDTTNPNTFCSRVSRDE 271
LDTT+ N CS S DE
Sbjct: 460 LDTTHGNARCSEDSSDE 476
>07_03_1384 +
26177053-26177227,26178754-26178823,26179427-26179469,
26179888-26179965,26180010-26180027,26180103-26180187,
26180273-26180355,26180489-26180546,26181258-26181368,
26181769-26181826,26182005-26182101,26182585-26182620,
26183107-26183137,26183993-26184046,26184159-26184301,
26184411-26184560,26185084-26185317,26185450-26185509,
26185974-26186204,26186829-26186981
Length = 655
Score = 28.3 bits (60), Expect = 7.1
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = -1
Query: 487 LGAVGHRRHQTRFVNYTRGAISKSQFLRV 401
+G GH + +F+ + G +KS+F ++
Sbjct: 297 IGKSGHHKEMWKFIQFIEGTFTKSEFTKI 325
>07_01_0618 +
4577417-4577430,4577838-4577874,4578070-4578173,
4578512-4578707,4579559-4579628,4579849-4579952,
4580296-4580335,4581016-4581070,4581418-4581426,
4582026-4582157,4582544-4582613,4583029-4583086,
4583173-4583228,4583315-4583470,4583589-4583700,
4583782-4583923,4584141-4584216,4584306-4584401,
4584509-4584637
Length = 551
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 460 QTRFVNYTRGAISKSQFLRVDLQVLGR 380
Q RF+NY ++ QFL++ Q+ GR
Sbjct: 313 QKRFINYLVNQLAAHQFLKIACQIEGR 339
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 395 QIDTEELRFRNSATCIIDETGLVASVPDGPELYNPIRSSDIMKSQPNRL 541
QI E ++F S+ I T L P GP+L + R D++ + P RL
Sbjct: 237 QILEEAVKFGRSSR--ISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRL 283
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 395 QIDTEELRFRNSATCIIDETGLVASVPDGPELYNPIRSSDIMKSQPNRL 541
QI E +F S+ I L P GP+L + R +DI+ + P RL
Sbjct: 267 QIQDEAKKFGRSSR--ISSVCLYGGAPKGPQLRDLERGADIVVATPGRL 313
>08_01_0947 +
9399366-9399568,9399683-9399855,9400745-9401130,
9401791-9402090,9402177-9402266,9403213-9403336,
9403452-9403615,9404572-9404802
Length = 556
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 501 IGLYNSGPSGTDATRPVSSIIHV 433
+GLYN GPS D P+S+ V
Sbjct: 81 LGLYNDGPSRNDTQSPLSNFFGV 103
>03_05_0755 - 27462388-27463140
Length = 250
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 703 SERYFGRRRTGRSCAWCCRR 762
S + F RR +SC WCC R
Sbjct: 171 SRQCFDDRRRLQSCCWCCHR 190
>01_03_0282 - 14580875-14580891,14582126-14585855
Length = 1248
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +2
Query: 461 VASVPDGPELYNPIRSSDI-----MKSQPNRLQIR 550
+ S+PDGP Y+ + + +I MKS P RLQ R
Sbjct: 1190 LVSLPDGPGAYSSLETLEIKYCPAMKSLPGRLQQR 1224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,417,681
Number of Sequences: 37544
Number of extensions: 392404
Number of successful extensions: 1062
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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