Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1203
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.12 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.49 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   0.49 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.49 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
 Frame = +1

Query: 262 PDPHRDGR-HGRQEERL---HHRCHKQTGHHRPGHPASRPSGPAHLHPAAGREVPRGHP 426
           P PH     HG         HH  H  T HH+   P +  S PA +        P  HP
Sbjct: 412 PGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIG---HTPHHHP 467



 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 529 PASLQAGHSPGHRGGDP 579
           PA++Q GH+P H    P
Sbjct: 454 PAAIQIGHTPHHHPHPP 470


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 20/83 (24%), Positives = 33/83 (39%)
 Frame = +2

Query: 401 DEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIH 580
           +  S E   +     S I + V  SY+    Q   G D    C   CK+ +R  +E+E+ 
Sbjct: 304 ETNSEETHQKDGSSDSVIKRTVVSSYLQ--LQDLLG-DFEHPCVMDCKVGVRTYLESELA 360

Query: 581 RERSRXXXXXXXVMDMDEEDPVS 649
           + + R          M + DP +
Sbjct: 361 KAKERPKLRKDMYEKMVQVDPTA 383


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 20/83 (24%), Positives = 33/83 (39%)
 Frame = +2

Query: 401 DEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIH 580
           +  S E   +     S I + V  SY+    Q   G D    C   CK+ +R  +E+E+ 
Sbjct: 219 ETNSEETHQKDGSSDSVIKRTVVSSYLQ--LQDLLG-DFEHPCVMDCKVGVRTYLESELA 275

Query: 581 RERSRXXXXXXXVMDMDEEDPVS 649
           + + R          M + DP +
Sbjct: 276 KAKERPKLRKDMYEKMVQVDPTA 298


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 20/83 (24%), Positives = 33/83 (39%)
 Frame = +2

Query: 401 DEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIH 580
           +  S E   +     S I + V  SY+    Q   G D    C   CK+ +R  +E+E+ 
Sbjct: 538 ETNSEETHQKDGSSDSVIKRTVVSSYLQ--LQDLLG-DFEHPCVMDCKVGVRTYLESELA 594

Query: 581 RERSRXXXXXXXVMDMDEEDPVS 649
           + + R          M + DP +
Sbjct: 595 KAKERPKLRKDMYEKMVQVDPTA 617


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 567 RRRSIARGVASSKPPLPLWTWTR 635
           ++++  +G AS+  P PL+ W R
Sbjct: 243 QQQAAPQGAASANLPSPLYPWMR 265



 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 298 EERLHHRCHKQTGHHRP 348
           E ++HH+ H Q  H +P
Sbjct: 165 ESQMHHQMHTQHPHMQP 181


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/41 (21%), Positives = 17/41 (41%)
 Frame = +1

Query: 322 HKQTGHHRPGHPASRPSGPAHLHPAAGREVPRGHPARQPSQ 444
           H+Q  HH+  HP ++            ++ P+    +Q  Q
Sbjct: 811 HQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQ 851



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 554 EWPACRLAGISPSGQRH*SLASPWRCKTSQ 465
           EWP    A I P  Q+  + A+P++   +Q
Sbjct: 751 EWPGLEHANIGPYIQKMIAAAAPFKGMETQ 780


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/29 (24%), Positives = 11/29 (37%)
 Frame = +1

Query: 256 HQPDPHRDGRHGRQEERLHHRCHKQTGHH 342
           H    H   RH  + +  ++  H    HH
Sbjct: 424 HYNHNHNQARHSSKSDNQNNNQHNDQAHH 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,017
Number of Sequences: 438
Number of extensions: 3391
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)