Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1202
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0512 - 24460391-24462337                                         30   1.2  
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916...    28   6.2  
05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431...    27   8.2  

>11_06_0512 - 24460391-24462337
          Length = 648

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 396 PRYGLVEHLIRYGVTIKHQ**AIHLYNS*IRLCLYCERAIKFGAGLNKKLLI 551
           P    +   +R G  + H   A+H  +  +R CL C  A   GA + K+LLI
Sbjct: 150 PTMAGIRRCVRDGEQMAHLRRAVHGMDEQLRHCLLCLAAFPEGAVIKKRLLI 201


>10_05_0101 -
           9167383-9167679,9167883-9167961,9168161-9168326,
           9169201-9169299,9169969-9171361
          Length = 677

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 241 TLQNLHTPRHDLCKCSVRSR 182
           T+QNL+ PR DLC+ S  S+
Sbjct: 5   TIQNLYAPRADLCEPSCSSK 24


>05_07_0064 +
           27440520-27440942,27442387-27442998,27443109-27443175,
           27443271-27443362,27443493-27443708,27443869-27444006,
           27444325-27444474
          Length = 565

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 517 LIALSQYKQSLIQLLYKCIAYY*CLIVTPYLIRCSTSPYRGPQGQIFRR 371
           ++AL+ +  S + L    +    C + T   +R + +P  G +G  FRR
Sbjct: 275 IVALAAWAWSYLVLALHTLVDVACFVATSLFLRDARTPLMGTEGVEFRR 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,584,460
Number of Sequences: 37544
Number of extensions: 329330
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)