Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1202
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    39   0.003
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    38   0.007
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    38   0.007
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    33   0.19 
AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p4...    28   4.2  
AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical ...    28   5.5  

>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 23/83 (27%), Positives = 40/83 (48%)
 Frame = -2

Query: 378 LGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYAS 199
           LG  +  ++ F  H K   + A F L  ++      +K  +   + LYKT IRP + Y +
Sbjct: 150 LGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---ILLYKTFIRPRLEYGT 206

Query: 198 VVFAHAARIHLKSFQIIQSRFCR 130
           VV +   +   K+ + +Q+ F R
Sbjct: 207 VVSSPTKKSDEKAIESVQNAFTR 229


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 22/83 (26%), Positives = 40/83 (48%)
 Frame = -2

Query: 378 LGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYAS 199
           LG  +  ++ F  H +   + A F L  ++      +K  +   + LYKT IRP + Y +
Sbjct: 180 LGFLISEKLDFSDHWRKCINLAKFQLANMFNKYSTSNKKLM---ILLYKTFIRPRLEYGT 236

Query: 198 VVFAHAARIHLKSFQIIQSRFCR 130
           VV +   +   K+ + +Q+ F R
Sbjct: 237 VVSSPTKKSDEKTIESVQNAFTR 259


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = -2

Query: 378 LGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYAS 199
           LG+  DS++TF+PHIK +    +  L R   ++     +       L+KT I P++ Y S
Sbjct: 198 LGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKTYILPLIEYGS 254

Query: 198 VVFA 187
            V++
Sbjct: 255 AVYS 258


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = -2

Query: 402  TVGPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCI 223
            T    V+ LG+  D ++ F  HI  V   +   + R   ++   S  S +    LYKT +
Sbjct: 971  TPSSTVRDLGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLYKTYV 1027

Query: 222  RPVMTYASVVFA 187
             P+M Y S V+A
Sbjct: 1028 APIMNYCSEVYA 1039


>AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p450
           family protein 25A5 protein.
          Length = 477

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 559 IVRISNFLLRPAPNLIALSQYKQSLIQLLY 470
           I   SNF  R  PN+  ++Q  QSL+Q  Y
Sbjct: 77  IQNFSNFSDRMTPNIFGMNQLNQSLLQNTY 106


>AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical
           protein C01B12.4 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 487 LIQLLYKCIAYY*CLIVTPYLIRCSTSPYR 398
           L+ LL  CIA+Y C ++ P L R   +PYR
Sbjct: 203 LMALLSMCIAFYGCYVMVP-LGREKHAPYR 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,962
Number of Sequences: 27780
Number of extensions: 273865
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)