Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1201
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.2  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.9  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.9  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    26   3.8  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   8.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.8  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.8  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = -2

Query: 376  NHTSVSE-EHLKSKRHIVQSE*F-TLKQYTCKY 284
            N  ++SE +HLKS++H++ +E F TLK +  +Y
Sbjct: 3488 NDDNLSEIKHLKSRKHLLLTETFKTLKAFGLQY 3520


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 472 VLNLPNFIKHNKIRLPRDAVNINM 401
           VL +PN  KH  I +PRD + I +
Sbjct: 20  VLGIPNETKHQWIFVPRDLIKIKI 43


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 7/26 (26%), Positives = 19/26 (73%)
 Frame = -1

Query: 233 TIYVFYVYLVTICFFLLFLFTNWILM 156
           T +++YV+ +T  F++++L   W+++
Sbjct: 309 TPHMYYVFYITSTFWIIYLLYVWLIL 334


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 550 IDNSATR-PLCTYFQIVYTPVRPIKG*VLNLPNFIKHN 440
           I NS+T  P     ++VYTP  P+   VL   +F+ HN
Sbjct: 61  IHNSSTSFPKSRSEKVVYTPSLPLSSSVLASFSFLPHN 98


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 218 YVYLVTICFFLLFLFTNW 165
           YV+L     + LFLF NW
Sbjct: 37  YVFLTAAGIYALFLFLNW 54


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/71 (15%), Positives = 33/71 (46%)
 Frame = -2

Query: 535  TRPLCTYFQIVYTPVRPIKG*VLNLPNFIKHNKIRLPRDAVNINMSGYFLKLYNHTSVSE 356
            T+ +  +F+ +Y+P + I    ++    +     +LP++ +   +    + L +H  +S 
Sbjct: 1399 TKIIAIFFKDLYSPHKEIYSVAIDALRHVLSQNQKLPKELLQSGLRPILMNLSDHNKLSV 1458

Query: 355  EHLKSKRHIVQ 323
              L+    +++
Sbjct: 1459 NGLEGLSRLLR 1469


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 298 YTCKYLLITNIIKISVLVIFILRFMSFMYI**RFVFSYYFCLLIGY 161
           Y    LL+T +I  S++   I+ F +  ++   F +SY    ++G+
Sbjct: 571 YPVYSLLVTIMICYSIIAPIIIGFAAVAFVLIYFAYSYNLIYVLGH 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,297
Number of Sequences: 5004
Number of extensions: 44008
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)