Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1201
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-14|CAB00118.2|  436|Caenorhabditis elegans Hypothetical p...    29   2.0  
AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    28   6.1  

>Z75955-14|CAB00118.2|  436|Caenorhabditis elegans Hypothetical
           protein R07B7.8 protein.
          Length = 436

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 260 NKCSCNIYT-TIYVFYVYLVTICFFLLF 180
           NKCS      T+++F V +V+I FFLLF
Sbjct: 40  NKCSRRYRNVTLFIFVVTIVSILFFLLF 67


>AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical
           protein Y39E4B.10 protein.
          Length = 581

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = -2

Query: 409 INMSGYFLKLYNHTSVSEEHLKSKRHI-VQSE*FTL-KQYTCKYLLITNIIKISVLVIFI 236
           I M+   +++  H   + + L+  RH+ +  + FT  K+ T K+L+  NI K +   I  
Sbjct: 261 IQMNHVEMQMSLHDPQNLDVLQFCRHLRILEKIFTFWKKKTQKFLIFLNIFKKNYYHIRK 320

Query: 235 LRFMSFMYI 209
           +RF +F YI
Sbjct: 321 IRFFNFFYI 329


>Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical
           protein C33A12.13 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 317 VVHLKTIHV*---ISFNYEYN*NKCSCNIYTTIYVFYVYLVTICFFLLFLFTNW 165
           +V ++TIH     ++F Y++N       I   +Y+   +LV    FL++  TNW
Sbjct: 7   IVPIETIHFNDSYMNFKYQFNEFPTFLAIIPWLYMIPTFLVIYKIFLIYSKTNW 60


>Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical
           protein H12I19.1 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -1

Query: 242 IYTTIYVFYVYLVTICFFLLFLFTNWILMLAFAHILIYLLRCT 114
           I   I +F ++++T  F+LL      I++LAF   L+Y L+ T
Sbjct: 105 IVMVIIIFCLHVITQIFYLL------IIVLAFERFLLYFLKST 141


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 224 VFYVYLVTICFFLLFLFTN--WILMLAFAHILIYLLR 120
           ++    V ICF + F+     ++LMLAF+ +L++ LR
Sbjct: 215 IWIAIFVAICFGVRFVGKTVAFVLMLAFSSLLVFFLR 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,250,403
Number of Sequences: 27780
Number of extensions: 236280
Number of successful extensions: 556
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)