Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1201
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    27   0.11 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.34 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.6  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 485 WPNWSINDLKICT*WSGRTIIYQ 553
           +PNWS ND+K C    G T +Y+
Sbjct: 106 YPNWSYNDVKYC---DGLTSVYR 125


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 531 LVALLSISE*IKDFQYFWAVKNVHTYLSR 617
           L  LL       DFQ+ W V N +TYL R
Sbjct: 5   LTLLLFAGTVAADFQHNWQVGNEYTYLVR 33


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 305 KTIHV*ISFNYEYN*NKCSCNIYTTIY 225
           KTIH   ++ Y YN N  + N Y   Y
Sbjct: 321 KTIHNNNNYKYNYNNNNYNNNNYNNNY 347


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 252 TLILIIFVIKRYLHVYCF 305
           T + ++FV+KR L  Y F
Sbjct: 232 TCLEVVFVLKRRLGYYLF 249


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 305 KTIHV*ISFNYEYN*NKCSCNIYTTIY-VFYVYLVTI 198
           KTIH   ++ Y YN N  + N     Y + Y+  + I
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 305 KTIHV*ISFNYEYN*NKCSCNIYTTIY-VFYVYLVTI 198
           KTIH   ++ Y YN N  + N     Y + Y+  + I
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 305 KTIHV*ISFNYEYN*NKCSCNIYTTIY-VFYVYLVTI 198
           KTIH   ++ Y YN N  + N     Y + Y+  + I
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,158
Number of Sequences: 438
Number of extensions: 3032
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)