Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1200
         (326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1082 - 11073874-11073988,11074072-11074133,11074217-110745...    27   3.5  
04_01_0143 + 1659380-1659535,1659641-1659917,1660372-1660453,166...    27   3.5  
08_02_0855 - 21913291-21913347,21914117-21914211,21915077-219151...    27   4.6  
01_06_0250 + 27876358-27879261                                         26   6.1  
10_08_1049 - 22555738-22555744,22556157-22556286,22556613-225567...    26   8.0  
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461...    26   8.0  

>08_01_1082 -
           11073874-11073988,11074072-11074133,11074217-11074505,
           11074652-11074743,11074840-11074966,11075075-11075156,
           11075611-11075887,11075993-11076158,11076874-11077202
          Length = 512

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 278 FMSGLLFSVQCKVLIIVS**CWSSDGGCHRCEK 180
           F  G+ +S   KV  I+S   W   G CHRC+K
Sbjct: 326 FQGGVTYSAVAKVSSIMSSIKWYYIG-CHRCDK 357


>04_01_0143 +
           1659380-1659535,1659641-1659917,1660372-1660453,
           1660562-1660688,1660785-1660876,1661023-1661311,
           1662130-1662141
          Length = 344

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 278 FMSGLLFSVQCKVLIIVS**CWSSDGGCHRCEK 180
           F  G+ +S   KV  I+S   W   G CHRC+K
Sbjct: 213 FQGGVTYSAVAKVSSILSSIKWYYIG-CHRCDK 244


>08_02_0855 -
           21913291-21913347,21914117-21914211,21915077-21915165,
           21915449-21915507,21917872-21918160,21918307-21918398,
           21918495-21918621,21918730-21918811,21919265-21919541,
           21919647-21919812,21920519-21920847
          Length = 553

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 278 FMSGLLFSVQCKVLIIVS**CWSSDGGCHRCEK 180
           F  G+ +S   KV  I+S   W   G CHRC+K
Sbjct: 326 FQGGVTYSAIAKVSSILSSIKWYYIG-CHRCDK 357


>01_06_0250 + 27876358-27879261
          Length = 967

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 316 GILSFFKPSELNNS*VDCSFLSNVRFSS*LADDAGAPMEAVTAARRTANLIN--SRIITL 143
           GIL      E+N S  DC  L  V F+S  A   G     +++ R  A+ ++  +  ITL
Sbjct: 582 GILFMVGCQEINGSSTDCQILVTVHFASLDAKGNGHGRGKISSTRDKADRLHFEAMDITL 641

Query: 142 AG 137
            G
Sbjct: 642 YG 643


>10_08_1049 -
           22555738-22555744,22556157-22556286,22556613-22556790,
           22556990-22557099,22557234-22557349,22557707-22557968,
           22558097-22558406,22558450-22558500,22558545-22558628
          Length = 415

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 312 FSAFLSQASLIIHEWIALF 256
           F AF   A++ IH W+ LF
Sbjct: 103 FMAFFDPATVFIHRWLPLF 121


>02_05_1224 +
           35045268-35045270,35045735-35045863,35046037-35046180,
           35046306-35046451,35046583-35046739,35046838-35046896,
           35046978-35047137,35047716-35047865,35047969-35048105,
           35048186-35048332,35048428-35048540,35048880-35048971,
           35049637-35049738,35050108-35050145,35050255-35050381,
           35050462-35050632,35050721-35050852,35050929-35051038,
           35051118-35051178,35051386-35051427,35051756-35051933,
           35052043-35052248,35052843-35052962,35053138-35053182,
           35053310-35053408,35053846-35054058,35054254-35054393,
           35054469-35054583,35054684-35054722,35054816-35054899,
           35054969-35055139,35055891-35056100,35056193-35056378,
           35056473-35056601,35056679-35056749,35056834-35056933,
           35057016-35057072,35057778-35057834,35057940-35058020,
           35058256-35058338,35058448-35058562
          Length = 1572

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 199 PPSELQHHQLTMMRTLHWTEKSN 267
           PP EL+ ++L   RT H+  +SN
Sbjct: 264 PPEELKRYKLGDPRTFHYLNQSN 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,575,871
Number of Sequences: 37544
Number of extensions: 88923
Number of successful extensions: 238
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)