Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1200
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-16|CAB63338.2|  156|Caenorhabditis elegans Hypothetical...    29   1.0  
AL032652-1|CAA21709.1|  317|Caenorhabditis elegans Hypothetical ...    27   2.4  
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def...    25   9.7  
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def...    25   9.7  
AL132943-11|CAB61047.2|   97|Caenorhabditis elegans Hypothetical...    25   9.7  
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t...    25   9.7  

>AL032631-16|CAB63338.2|  156|Caenorhabditis elegans Hypothetical
           protein Y106G6H.8 protein.
          Length = 156

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 138 PASVIMRELMRLAVLLAAVTASIGAPASSANYDENLTLDRKEQSTHELLS 287
           P SV M  ++RLA L  AV  S+GA  S    D N ++D + ++  +  S
Sbjct: 40  PPSVDMSPIIRLAGLSGAVAISLGAYGSHVLRD-NPSIDERRRTAFDTAS 88


>AL032652-1|CAA21709.1|  317|Caenorhabditis elegans Hypothetical
           protein Y63D3A.2 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 205 SELQHHQLTMMRTLHWTEKSNPLMNY 282
           S L H ++ +   LHW + SNP M Y
Sbjct: 215 SSLTHREINLF-LLHWVKGSNPRMRY 239


>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoforma protein.
          Length = 1175

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 228 NYDENLTLDRKEQSTHELLSSLGLKK 305
           N + N+ LD   Q+ H+L SSLG  K
Sbjct: 491 NEEGNVLLDDGAQNLHQLYSSLGKTK 516


>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoformb protein.
          Length = 1178

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 228 NYDENLTLDRKEQSTHELLSSLGLKK 305
           N + N+ LD   Q+ H+L SSLG  K
Sbjct: 491 NEEGNVLLDDGAQNLHQLYSSLGKTK 516


>AL132943-11|CAB61047.2|   97|Caenorhabditis elegans Hypothetical
           protein Y116F11B.1 protein.
          Length = 97

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 174 AVLLAAVTASIGAPASSANYDENLTLDR 257
           AVL+ +V+A +GA A++AN+     L R
Sbjct: 10  AVLVLSVSAHLGAQAAAANFKAEGPLSR 37


>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
           c-terminal hydrolase protein.
          Length = 1175

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 228 NYDENLTLDRKEQSTHELLSSLGLKK 305
           N + N+ LD   Q+ H+L SSLG  K
Sbjct: 491 NEEGNVLLDDGAQNLHQLYSSLGKTK 516


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,528,704
Number of Sequences: 27780
Number of extensions: 74022
Number of successful extensions: 220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)