Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1199
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        30   0.19 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    29   0.44 
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   3.1  

>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
 Frame = +3

Query: 180 FIDYIFSLYWEAKRTPLPNLEKKHIILKDDAVT-IAAKIRNRQLKSEDLVQMCIERIKIV 356
           F  Y++         P+P  +  +I L+D  +  +   + N  L S D+V   ++R   V
Sbjct: 42  FTTYVYPDTNSTNIFPMPKCQ--NITLEDATIDQLQNYMENGILTSTDIVHCYLDRYLQV 99

Query: 357 NPILNAVTDXXXXXXXXXXXXIDRMLDEGLSEEYLKKKPFLGVPFTAKESHAVKGLLHT 533
           NP +N +              I   LD+  +   + + P  G+PF  K++ A K  + T
Sbjct: 100 NPYVNGILQ-----LNPDVLTIASELDDERANGII-RGPLHGIPFIVKDNFATKDKMDT 152


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 222  TPLPNLEKKHIILKDDAVTIAAKIRNRQLKSEDLVQ 329
            +P P+L KKHI LK   + + +  R +++K+E L Q
Sbjct: 1154 SPDPDLSKKHIKLKSLIIVVCSIERMKRMKNEWLKQ 1189


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 169 YVLKTRNACLIMLNAIPRIMLQVLLPGTECDVFPSPWFVVHIV 41
           Y   + N+ L   + IP I    L P T CD+ P P F V ++
Sbjct: 179 YPASSYNSALHWSHRIPNI----LNPSTLCDMLPVPQFAVRLM 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,788
Number of Sequences: 5004
Number of extensions: 44800
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)