Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1199
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0078 - 18906900-18907082,18907104-18907337,18907429-189076...    33   0.19 
09_02_0092 + 4173741-4175417                                           28   4.1  
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878...    28   4.1  
05_03_0487 + 14629678-14629789,14637563-14637687,14637898-146379...    27   7.2  
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390...    27   7.2  
07_01_0659 + 4946937-4946990,4947579-4947698,4947820-4947918,494...    27   9.6  

>11_05_0078 -
           18906900-18907082,18907104-18907337,18907429-18907653,
           18907739-18907909,18907994-18908109,18908215-18908369,
           18908450-18908573,18909007-18909107,18909215-18909297,
           18909383-18909607,18909694-18909810,18910488-18910640
          Length = 628

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 23/89 (25%), Positives = 40/89 (44%)
 Frame = +3

Query: 273 VTIAAKIRNRQLKSEDLVQMCIERIKIVNPILNAVTDXXXXXXXXXXXXIDRMLDEGLSE 452
           + +   IR +Q+ S +L  + + R+K   PI+ +V               D +L++G   
Sbjct: 167 IELGELIRTKQVTSRELTAVFLRRLKRYGPIIESVITITDDLAYKQAKEADDLLEQG--- 223

Query: 453 EYLKKKPFLGVPFTAKESHAVKGLLHTLG 539
           +YL   P  G+P+  K+  AV     T G
Sbjct: 224 KYL--GPLHGIPYGLKDIIAVPEYKTTWG 250


>09_02_0092 + 4173741-4175417
          Length = 558

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 73  FPSPWFVVHIVLKAGYIIITNVV 5
           FPSPW VV +V  A  I++ +++
Sbjct: 523 FPSPWVVVSLVAAAAVIVVPSLL 545


>03_05_0884 - 28487013-28487271,28487355-28487516,28487594-28487802,
            28488490-28488630,28488876-28489071,28489207-28489379,
            28490095-28490142,28490301-28490378,28490526-28490792,
            28491689-28491842,28491928-28492064,28492459-28492536,
            28493039-28493216,28493589-28493803,28494063-28494422,
            28494497-28494973,28495561-28495665,28495838-28496020,
            28496105-28496263,28496937-28497154,28497737-28497905,
            28498262-28498568,28498699-28498826,28498902-28499060,
            28499194-28499364,28500258-28500376,28500604-28500853,
            28501007-28501759
          Length = 1950

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = -3

Query: 173  QICSEDQECVFDHVKCYSSNNVTSFAARHRMRCFSVAVVCCAHCFKSRLY 24
            + CS+    + DH+   S  N+  F+   R+ C+  A +C     ++ ++
Sbjct: 1053 ETCSQSTALLLDHMVSDSRANLDGFSQLIRLLCWCPAYICTPDAMETGIF 1102


>05_03_0487 +
           14629678-14629789,14637563-14637687,14637898-14637987,
           14638267-14638319,14638616-14638718,14639057-14639131,
           14639479-14639583
          Length = 220

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 122 SSNNVTSFAARHRMRCFSVAVVCCAHCFKSRLYYNYE 12
           +S+ V SF     M   + + + C+ CF   ++Y+YE
Sbjct: 173 TSSAVNSFCIAANMSFSTTSELTCSMCFMDSVHYHYE 209


>03_04_0167 +
           17936598-17936763,17938735-17938831,17938919-17939027,
           17939125-17939163,17939655-17939768,17939886-17939947,
           17940691-17940793,17942111-17942260,17942693-17942761,
           17942840-17942896,17942966-17943226,17946154-17946222,
           17946374-17946475,17947200-17947270,17947375-17947578,
           17947848-17947941,17948350-17948646
          Length = 687

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +3

Query: 198 SLYWEAKRTPLPNLEKKHIILKDDAVTIAAKIRNRQLKSEDLVQMCIERIKIVNPILN 371
           +LY E  R  L  L+K HI  +DD + I  +  ++     + +Q  + +I+I NP +N
Sbjct: 323 ALYDEFMRNGLSTLQKLHIQQRDDIMKILEEESSQLSTVVNEIQDKLSKIRI-NPEIN 379


>07_01_0659 +
           4946937-4946990,4947579-4947698,4947820-4947918,
           4948038-4948175,4948268-4948402,4948501-4948609,
           4948735-4948976,4949061-4949180,4949272-4949391,
           4949477-4949599,4949708-4949812,4949896-4950040,
           4950337-4950501,4950621-4950859,4950939-4950971,
           4951082-4951163,4951314-4951474,4951566-4951751,
           4951877-4952059,4952166-4952347,4952461-4952557
          Length = 945

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 197 EYVINE*VQICSEDQECVFDHVKCYSSNNVTSFAARHRMRCF 72
           E V+NE V + +   E VF+H++C +   +TS  A  R+  F
Sbjct: 9   EAVLNESVDLENIPLEEVFEHLRC-NREGLTSANAEQRLNLF 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,497,903
Number of Sequences: 37544
Number of extensions: 276075
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)