Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1199
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-16|CAB61089.1|  535|Caenorhabditis elegans Hypothetical...    44   7e-05
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    31   0.53 
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    31   0.53 
U53154-8|AAC25846.1|  328|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical pr...    29   2.1  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    29   2.1  
AC090999-11|ABD63207.1|  356|Caenorhabditis elegans Hypothetical...    29   2.1  
Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical...    28   4.9  
AL132862-15|CAB60549.1|  703|Caenorhabditis elegans Hypothetical...    27   8.6  

>AL132949-16|CAB61089.1|  535|Caenorhabditis elegans Hypothetical
           protein Y53F4B.18 protein.
          Length = 535

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
 Frame = +3

Query: 168 YLDLFIDYIFSLYWEAKRTPLPNLEKKHIILKDDAVTIAAKIRNRQLKSEDLVQMCIERI 347
           Y   F+ ++ + ++  +    P  ++  +I    AV +   I  +++ S  LV+  I RI
Sbjct: 24  YTIRFVFWLVNTFFRERVYVTPPTDRLLLISATQAVQM---ISQKEISSTALVESYIHRI 80

Query: 348 KIVNPILNAVTDXXXXXXXXXXXXIDRML---DEGLSEEYLKKKPFLGVPFTAKESHAVK 518
           + VN  +NAV              +D  +   DE   ++ L++KP  GVPFT K++  V+
Sbjct: 81  EQVNNTINAVVVKLFESAREQANEVDSFIALADEDDIKKKLEEKPLYGVPFTMKDALEVE 140

Query: 519 GLLHTLG 539
             + T G
Sbjct: 141 NEIITCG 147


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
 Frame = +3

Query: 9   TFVIII*PAFKTMCTTNHGDGKTSHSVPGSKTCNIIRGIAFNMI-----KHAFLVFRTYL 173
           T VI+I P    +C+   G  KT+  +   + CN +    F+MI     + +FL     L
Sbjct: 608 TTVILILPRSDDVCSVPTGSSKTTEYMESKRQCNSVPIPVFDMIHFLTYQTSFLTSYCKL 667

Query: 174 DLFIDYIFSL-YWEAKRTPLPNLEK 245
            +F+++   +  +E ++  L N  K
Sbjct: 668 SIFLEHFMMISQFEQRKCLLENDSK 692


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
 Frame = +3

Query: 9   TFVIII*PAFKTMCTTNHGDGKTSHSVPGSKTCNIIRGIAFNMI-----KHAFLVFRTYL 173
           T VI+I P    +C+   G  KT+  +   + CN +    F+MI     + +FL     L
Sbjct: 744 TTVILILPRSDDVCSVPTGSSKTTEYMESKRQCNSVPIPVFDMIHFLTYQTSFLTSYCKL 803

Query: 174 DLFIDYIFSL-YWEAKRTPLPNLEK 245
            +F+++   +  +E ++  L N  K
Sbjct: 804 SIFLEHFMMISQFEQRKCLLENDSK 828


>U53154-8|AAC25846.1|  328|Caenorhabditis elegans Hypothetical
           protein C33G8.5 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 129 FNMIKHAFLVFRTYLDLFIDY--IFSLYWEAKRTPLPNL 239
           + M    F V   +L LF+ +  +F LY++A  TP+PN+
Sbjct: 130 YEMCGRGFGVLLGFLQLFLAFAFLFKLYFDASFTPVPNV 168


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -3

Query: 290 LCG-NGHSIVLKYNMLFFQIWQRCPLCFPVKGEYVINE*-VQICSEDQECVFD 138
           +CG NGH      N      W RC   F   GEY   +  V  C  D++CVFD
Sbjct: 28  ICGRNGHCHAGPVNGTQTSYWCRCDEGFG--GEYCEQQCDVSKCGADEKCVFD 78


>U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical
           protein B0218.1b protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +3

Query: 432 LDEGLSEEYLKKKPFLGVPFTAKESHAVKGLLHTLG 539
           LDE     Y  K P  GVP + KE   VKG   T G
Sbjct: 117 LDEQAKLPYYVKPPLFGVPLSLKECLKVKGYDTTRG 152


>U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical
           protein B0218.1a protein.
          Length = 572

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +3

Query: 432 LDEGLSEEYLKKKPFLGVPFTAKESHAVKGLLHTLG 539
           LDE     Y  K P  GVP + KE   VKG   T G
Sbjct: 117 LDEQAKLPYYVKPPLFGVPLSLKECLKVKGYDTTRG 152


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -3

Query: 290 LCG-NGHSIVLKYNMLFFQIWQRCPLCFPVKGEYVINE*-VQICSEDQECVFD 138
           +CG NGH      N      W RC   F   GEY   +  V  C  D++CVFD
Sbjct: 28  ICGRNGHCHAGPVNGTQTSYWCRCDEGFG--GEYCEQQCDVSKCGADEKCVFD 78


>AC090999-11|ABD63207.1|  356|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.4 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +3

Query: 129 FNMIKHAFLVFRTYLDLFIDYIFSLYWEAKRTPLPNLEKKHIILKDDAVTIAAKIRN--- 299
           F  + H+F   R +LD   ++   LY EA R     L++    L D+     AK+ +   
Sbjct: 208 FIPLVHSFNGIRNHLDKISNHCCPLYGEAPRVTAGLLDESLRSLDDELKNFEAKLNDFNS 267

Query: 300 -RQLKSEDLVQMCIE 341
             + KS  L + C E
Sbjct: 268 FLEYKSRQLFESCSE 282


>Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical
           protein C31A11.7 protein.
          Length = 706

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 296 SDLCGNGHSIVLKYNMLFFQIWQRCP 219
           +D  GNG++ +L Y+M++ + W RCP
Sbjct: 479 ADFFGNGNTNLL-YDMIYHKPWIRCP 503


>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical
           protein W04A8.7 protein.
          Length = 1792

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 164 SEDQECVFDHVKCYSSNNVTSFAARHRMRC 75
           SED+  + D +KC   N   +F A  R +C
Sbjct: 887 SEDEVTIEDEIKCAPWNTTRAFLASQREKC 916


>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
           protein W04A8.7 protein.
          Length = 1792

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 164 SEDQECVFDHVKCYSSNNVTSFAARHRMRC 75
           SED+  + D +KC   N   +F A  R +C
Sbjct: 887 SEDEVTIEDEIKCAPWNTTRAFLASQREKC 916


>AL132862-15|CAB60549.1|  703|Caenorhabditis elegans Hypothetical
           protein Y73F8A.21 protein.
          Length = 703

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 186 DYIFSLYWEAKRTPLPNLEKKHIILKDDAVTIAAKIRNRQLK 311
           D +FS+  E + +P PN+   HI+L    VT  A   +  L+
Sbjct: 369 DCLFSIVKEVRLSPTPNVCYGHILLSLATVTELANAMSENLQ 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,730,522
Number of Sequences: 27780
Number of extensions: 256724
Number of successful extensions: 644
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)