Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1199
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.6  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   4.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.1  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 2   IHNIRNYNIAGF*NNVHN 55
           IHN  NYN   + NN +N
Sbjct: 323 IHNNNNYNNNNYNNNYNN 340


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 297 NRQLKSEDLVQMCIERIKIVNPILNA 374
           N  LK   + Q CI + K +N ILN+
Sbjct: 111 NVHLKITKIFQ-CITKFKTINDILNS 135


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 160 SEHIWTYSLITYSPFTGK 213
           SEHIW   ++ Y+   G+
Sbjct: 99  SEHIWLPDIVLYNNADGE 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,230
Number of Sequences: 438
Number of extensions: 2860
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)