Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1197
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    25   2.7  
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   2.7  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   4.7  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    24   6.2  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    24   6.2  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   8.2  

>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 20  YPVTHHYYYR*CFDRQYTNLLK 85
           Y +TH+Y  R  F+R+Y +L++
Sbjct: 294 YKLTHYYGNRISFEREYFDLIR 315


>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 246 LCLIIVFLLNYTTSEFVCAIRNLFILQVGYPIDLKLQLLLVF 121
           L +++ FL+NYT      +  + F L   Y I+ +L  L  F
Sbjct: 18  LPIVVSFLINYTCDNKFYSSPSTFALLSSYLIEKRLNFLHAF 59


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -2

Query: 276 IKFTEIRNNFLCLIIVFLLNYTTSEFVCAIRNLFILQVGYPIDLKLQLLLVFRYSALIRW 97
           I  +E R   +  ++  LL+    E VCA RN   +Q G     K  LLL    S L +W
Sbjct: 315 IGISESRQEDVFCLLAALLHLGNIE-VCATRNEAQIQPGDGYLQKAALLLGVDSSTLAKW 373


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 104 LDGSQVFSTNWCTAYQNISDSNNGA*PGSTSYT 6
           L G  +F + W  AY+ ISD+ + A   S+SYT
Sbjct: 622 LMGYLLFCSGWI-AYRAISDAIHNASSTSSSYT 653


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -2

Query: 357 SIVSYTWCHSWE*SNVNKTPLD*NTI*IKFTEIRNNFLCLIIVFLLNYTTSEFVCAIRNL 178
           S+V+    HSW  S           + IK  E+   FLC +   L+N+ T     AI + 
Sbjct: 458 SLVTDFLLHSWPKSAERLHTSQSPFVRIKTAEVFYEFLCFLRPSLINFDTILRKSAITSF 517

Query: 177 FIL 169
            +L
Sbjct: 518 SVL 520


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 252 NFLCLIIVFLLNYTTSEFV 196
           N +C++I   ++YT  EFV
Sbjct: 357 NIVCMVIHITIHYTGKEFV 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,382,577
Number of Sequences: 5004
Number of extensions: 24933
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)