Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1197
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0542 + 16940464-16940527,16941906-16942101,16942204-169423...    28   2.5  
06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397     27   3.4  
08_02_1010 - 23538517-23538750,23539199-23539507,23539902-235400...    27   4.4  

>04_03_0542 +
           16940464-16940527,16941906-16942101,16942204-16942365,
           16942721-16942802,16942873-16943139,16943285-16943416
          Length = 300

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 171 LQVGYPIDLKLQLLLVFRYSALIRWQPSIFNKL 73
           L+ GY +D++ ++ LV R  + +R + SI NKL
Sbjct: 43  LRQGYTLDVEAEVQLVDRIKSKLRIKSSIHNKL 75


>06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397
          Length = 851

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = -2

Query: 252 NFLCLIIVFLLNYTTSEFVCAIRNLFILQVGYPIDLKLQLLLVFRYSALIRWQPS 88
           +F+  I+V +L   T E +   R L ++ +   +DL L LLL +   + +RW+PS
Sbjct: 753 SFVASIVVIILLLPT-ELLKKNRWLRVMNITIVLDL-LGLLLAYVAGSSMRWEPS 805


>08_02_1010 -
           23538517-23538750,23539199-23539507,23539902-23540063,
           23540521-23540710,23540881-23541059,23541155-23541298
          Length = 405

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 346 LHLVSLMGMIQCQQNSFRLEYD 281
           +HL  L   +QC++N  R++YD
Sbjct: 309 IHLGVLFSALQCEKNYLRIQYD 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,774,146
Number of Sequences: 37544
Number of extensions: 121555
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)