Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1197
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    35   0.020
Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical p...    27   3.0  
Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical p...    26   9.1  
Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical ...    26   9.1  
AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical ...    26   9.1  

>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 34.7 bits (76), Expect = 0.020
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 240 LIIVFLLNYTTSEFVCAIRNLFILQVGYPIDLKLQLLLVFRYSALIRWQPSIFNKLVY 67
           LII F LNY T  F C +  L +  + +P D +   + + R+  LI   P +F  +++
Sbjct: 112 LIITFYLNYVTMLFPCLVALLRLNLIIFPSDFQKINIKILRWLPLIFLYPILFTVIMF 169


>Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical
           protein C08F11.4 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -2

Query: 246 LCLIIVFLLNYTTSEFVCAIRNLFILQVGYPIDLKLQLLLVFRYSALIRWQPSIFNKLVY 67
           + +II F LNY T  F C +  L +  + +P + +     +  +  LI   P  F  +++
Sbjct: 110 ILIIITFYLNYATMLFPCLVALLRLNSIIFPSNYQKINARILDWLPLIFIYPFFFTVIMF 169


>Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 84  KYLAAI*LTHYNEKPTTTEVSNQSDNPLVK*IDYG 188
           +YL  + + H + KP    +++ SD P VK  D+G
Sbjct: 882 RYLHHLNIVHCDLKPENILLNSNSDFPQVKLCDFG 916


>Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 84  KYLAAI*LTHYNEKPTTTEVSNQSDNPLVK*IDYG 188
           +YL  + + H + KP    +++ SD P VK  D+G
Sbjct: 882 RYLHHLNIVHCDLKPENILLNSNSDFPQVKLCDFG 916


>Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical
           protein F36G9.5 protein.
          Length = 327

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 240 LIIVFLLNYTTSEFVCAIRNLFILQVGYP 154
           +IIVF +NY T  F C +  L +  + +P
Sbjct: 116 IIIVFYINYATMIFPCLVALLRLNLIVFP 144


>AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 84  KYLAAI*LTHYNEKPTTTEVSNQSDNPLVK*IDYG 188
           +YL  + + H + KP    +++ SD P VK  D+G
Sbjct: 882 RYLHHLNIVHCDLKPENILLNSNSDFPQVKLCDFG 916


>AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 84  KYLAAI*LTHYNEKPTTTEVSNQSDNPLVK*IDYG 188
           +YL  + + H + KP    +++ SD P VK  D+G
Sbjct: 882 RYLHHLNIVHCDLKPENILLNSNSDFPQVKLCDFG 916


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,469,371
Number of Sequences: 27780
Number of extensions: 132710
Number of successful extensions: 246
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)