Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1197
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    26   0.16 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   1.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   7.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   7.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   7.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   7.7  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 64  AVHQFVENTWLPSN*RTITKNQQQLKFQINRITH 165
           A H +     +P + RT+TK  +  K Q +R TH
Sbjct: 20  AEHGYASTMPMPDDMRTVTKRPKTKKSQGSRTTH 53


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 125 FFVIVR*LDGSQVFSTNWCTAYQNI 51
           F  I   L+   +F+T+WC  ++++
Sbjct: 101 FSAIYEVLENRWLFTTDWCDVWRSL 125


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 246 LCLIIVFLLNYTTSEFVCAIR 184
           LC ++ F L    ++ VC I+
Sbjct: 704 LCYLVTFALVLRPTDIVCGIQ 724


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 173 FYKWVIRLI*NFSCCWF 123
           FY  +  +I  + CCW+
Sbjct: 475 FYDGIRDMIGYYPCCWW 491


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 173 FYKWVIRLI*NFSCCWF 123
           FY  +  +I  + CCW+
Sbjct: 528 FYDGIRDMIGYYPCCWW 544


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 76  FVE--NTWLPSN*RTITKNQQQ 135
           F+E  N  LPS   T+TKN +Q
Sbjct: 667 FIEAPNKTLPSLPSTLTKNSKQ 688


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 105 LTHYNEKPTTTEVSNQSDN 161
           L+ YN+KP      N  +N
Sbjct: 151 LSDYNDKPIPASCCNSPEN 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,966
Number of Sequences: 438
Number of extensions: 1787
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)