Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1196
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   4.7  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    25   4.7  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   8.2  

>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 418 SPSGGPYARLSTRAIKKKRQYSVYCASSINMGGDIQTQSLWT 293
           SPSGG +A  +T  +     Y+ +    IN+  DI   +  T
Sbjct: 680 SPSGGAFAAATTEGLMIYSLYNDFLFDPINLDMDITPSTTLT 721


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +3

Query: 384 VDRRAY-GPPDGEWLPSPMDFSNAKGR 461
           VDR  Y G     W P P+D SNA  R
Sbjct: 71  VDRSKYIGATVSGWAPGPLDGSNAAWR 97


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 171  PRQRELQLTPTWRRSEDL 118
            P +REL  TP+W R   L
Sbjct: 1012 PSKRELPATPSWTRDSSL 1029


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,994
Number of Sequences: 5004
Number of extensions: 41570
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)