Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1196
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1007 + 7846266-7846526,7848368-7848420,7849231-7849432,784...    28   4.7  

>06_01_1007 +
           7846266-7846526,7848368-7848420,7849231-7849432,
           7849526-7849609,7850005-7850188,7850605-7850741,
           7850875-7850939,7851093-7851762
          Length = 551

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 35  VECLALGITRSLMLRLDHGHRSSGQIVARSSER 133
           V CL  G+  +  LRL H     G +VARS E+
Sbjct: 17  VRCLGRGVDMAGDLRLKHCKDEGGCLVARSGEK 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,296,750
Number of Sequences: 37544
Number of extensions: 303943
Number of successful extensions: 583
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)