Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1196
         (491 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX538169-1|CAD98046.1|  914|Homo sapiens hypothetical protein pr...    38   0.025
BC117177-1|AAI17178.1|  914|Homo sapiens transmembrane and tetra...    38   0.025
BC117175-1|AAI17176.1|  914|Homo sapiens transmembrane and tetra...    38   0.025
AK074973-1|BAC11325.1|  815|Homo sapiens BUNIT (EC 2.4.1.-).  pr...    38   0.025
AJ697717-1|CAG26973.1|  914|Homo sapiens SMILE protein protein.        38   0.025

>BX538169-1|CAD98046.1|  914|Homo sapiens hypothetical protein
           protein.
          Length = 914

 Score = 37.5 bits (83), Expect = 0.025
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 6   RHLTFXXXXXXXXXXXXXXXXXCCDWTMGTVALVKSWRDPRN 131
           R LTF                 CCDWTMGT+ L++S  D RN
Sbjct: 279 RQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESLLDIRN 320


>BC117177-1|AAI17178.1|  914|Homo sapiens transmembrane and
           tetratricopeptide repeat containing 3 protein.
          Length = 914

 Score = 37.5 bits (83), Expect = 0.025
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 6   RHLTFXXXXXXXXXXXXXXXXXCCDWTMGTVALVKSWRDPRN 131
           R LTF                 CCDWTMGT+ L++S  D RN
Sbjct: 279 RQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESLLDIRN 320


>BC117175-1|AAI17176.1|  914|Homo sapiens transmembrane and
           tetratricopeptide repeat containing 3 protein.
          Length = 914

 Score = 37.5 bits (83), Expect = 0.025
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 6   RHLTFXXXXXXXXXXXXXXXXXCCDWTMGTVALVKSWRDPRN 131
           R LTF                 CCDWTMGT+ L++S  D RN
Sbjct: 279 RQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESLLDIRN 320


>AK074973-1|BAC11325.1|  815|Homo sapiens BUNIT (EC 2.4.1.-).
           protein.
          Length = 815

 Score = 37.5 bits (83), Expect = 0.025
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 6   RHLTFXXXXXXXXXXXXXXXXXCCDWTMGTVALVKSWRDPRN 131
           R LTF                 CCDWTMGT+ L++S  D RN
Sbjct: 219 RQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESLLDIRN 260


>AJ697717-1|CAG26973.1|  914|Homo sapiens SMILE protein protein.
          Length = 914

 Score = 37.5 bits (83), Expect = 0.025
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 6   RHLTFXXXXXXXXXXXXXXXXXCCDWTMGTVALVKSWRDPRN 131
           R LTF                 CCDWTMGT+ L++S  D RN
Sbjct: 279 RQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESLLDIRN 320


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,358,181
Number of Sequences: 237096
Number of extensions: 1655481
Number of successful extensions: 2541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2541
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)