Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1196
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 405 PPDGEWLPSPMDFSNAKG 458
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 424 YRRPWTSAMPRAEPSR 471
           Y+RP T+  PRA  SR
Sbjct: 159 YKRPRTTFEPRATDSR 174


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 137 HVGVSCSSRCRGYSCLAYKMFRLIHG 214
           H G +  + C G  CL   M   IHG
Sbjct: 31  HAGNAEKTLCSGQVCLGSVMQLPIHG 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 330 IWVAIFRLSLYGLKKPLKYLWTVNLLVY 247
           +W+   +  LY +K  LK    +N L+Y
Sbjct: 143 LWLYKDKTILYMVKLTLKLSCAMNFLIY 170


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 210 WIRRNILYARH 178
           W+RRN+L  +H
Sbjct: 183 WMRRNVLNKQH 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,201
Number of Sequences: 438
Number of extensions: 3117
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)