Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1195
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   3.4  
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    27   3.4  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    26   4.5  
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M...    26   4.5  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    26   5.9  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    26   5.9  

>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 148 LWFLLKVTVFFWLSFSTSFWYLGSLLTV 65
           LW +L VT+ F   F+   W LG LL +
Sbjct: 465 LWVILNVTLSFAGFFTIYLWTLGRLLHI 492


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 102 LKESQKKTVTFNKNHNRYSNFDNEVSDPNDKENV 203
           LK S     T N + N YSN D+  +  +D+E+V
Sbjct: 97  LKRSPSADTTGNSSLNAYSNEDSGAASLSDEESV 130


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 24  LLLSENGGSRITMQTVSKDPKYQNDVLKESQ 116
           +L  ENG +  TM++  + PK+   VLKE +
Sbjct: 705 VLPKENGENLSTMESTQELPKFSFSVLKEEK 735


>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 500 VALRTCLRLRSVKCSECNTRMSFHPL 577
           V++RT    R + C EC+  ++ HPL
Sbjct: 10  VSIRTACCRRWIDCIECHNEIADHPL 35


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 530 SSTEDTYVEQLQGVP*HDAVVVQAQSVGALPALLKGSVAPGLAQGH 393
           SS+ D Y+    G+P    +V++  S+     LLK   A GL Q H
Sbjct: 35  SSSFDYYLSG--GIPMKSLLVIEEDSMDYASVLLKFFAAEGLKQDH 78


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 556 TNVVSPIERTSVFK*GPGSSTPSF 627
           +N VSP+E T++ K  P  S P+F
Sbjct: 34  SNTVSPVEETALDKVDPEFSDPNF 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,186
Number of Sequences: 5004
Number of extensions: 31502
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)