Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1195
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40797-13|AAB37545.1|  193|Caenorhabditis elegans Hypothetical p...    36   0.027
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    31   1.0  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      31   1.0  
U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    29   3.2  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    29   3.2  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    29   3.2  
Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z68320-1|CAB63328.2|  278|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U42439-7|AAA83511.1|  304|Caenorhabditis elegans Collagen protei...    27   9.6  
AL137227-6|CAB70236.2|  159|Caenorhabditis elegans Hypothetical ...    27   9.6  
AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical...    27   9.6  
AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical...    27   9.6  

>U40797-13|AAB37545.1|  193|Caenorhabditis elegans Hypothetical
           protein C28C12.2 protein.
          Length = 193

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 23/62 (37%), Positives = 29/62 (46%)
 Frame = +2

Query: 332 GERR*TSEAGGPGQDPRRPSXGPAQGQARPSPSEGPGERQQTEPVRRQRHVREHPVVALR 511
           GE    +E+      P RPS  P +  ++ S S  P     TEPVRR  H R HP   +R
Sbjct: 112 GELTLPAESSIAVSPPPRPSSEPLRHLSQVSLSARPAS---TEPVRRDVHWRVHPSAKIR 168

Query: 512 TC 517
            C
Sbjct: 169 KC 170


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 380 RRPSXGPAQGQARPSPSEGPGERQ-QTEPVRRQR 478
           RR S  P + + R SPS+ P  R+  T P+RR+R
Sbjct: 491 RRRSPSPERQRKRRSPSDSPPTRRLSTSPIRRRR 524


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 380 RRPSXGPAQGQARPSPSEGPGERQ-QTEPVRRQR 478
           RR S  P + + R SPS+ P  R+  T P+RR+R
Sbjct: 491 RRRSPSPERQRKRRSPSDSPPTRRLSTSPIRRRR 524


>U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical
           protein T05E8.3 protein.
          Length = 856

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 39  NGGSRITMQTVSKDPKYQNDVLKESQKKTVTFNKNHNRYSNFDNEVSDPNDKENVANG 212
           NG SR   QT  ++ K+QN  L+  +KKT+   K   + +NF  E    +    + NG
Sbjct: 44  NGNSR---QTGGQEQKFQN--LEALKKKTMLLKKKKKQMNNFQKEEELLSSTFRITNG 96


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 359 GGPGQDPRRPSXGPAQGQARPSPSEGPGERQQ 454
           GGPG     PS G A     P P  GPG   Q
Sbjct: 187 GGPGAPGNTPSGGAAGPPGPPGPPGGPGNDGQ 218


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +2

Query: 365  PGQDPRRPSXGPAQGQARPSPSEGPGERQQTEP 463
            P   P  P   P      PSPSE PG   Q  P
Sbjct: 1790 PSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSP 1822


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +2

Query: 365 PGQDPRR---PSXGPAQGQARPSPSEGPGERQQTEPVRRQ 475
           P +DP+    PS GP      PSPS+ PG      P  R+
Sbjct: 217 PSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRR 256


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +2

Query: 365  PGQDPRRPSXGPAQGQARPSPSEGPGERQQTEP 463
            P   P  P   P      PSPSE PG   Q  P
Sbjct: 1797 PSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSP 1829


>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.6 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 353 EAGGPGQDPRRPSXGPAQGQARPSPSEGPGER 448
           +AG PG +P  P     +G+  P PS  PG +
Sbjct: 185 QAGAPG-NPGSPGKSGQRGRGLPGPSGAPGSQ 215


>Z68320-1|CAB63328.2|  278|Caenorhabditis elegans Hypothetical
           protein W07A12.5 protein.
          Length = 278

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 356 AGGPGQDPRRPSXGPAQGQARPSPSEGP 439
           A GPG DP +P      G+  P  ++GP
Sbjct: 232 ATGPGGDPGKPGGNGIPGEPGPIGNQGP 259


>U42439-7|AAA83511.1|  304|Caenorhabditis elegans Collagen protein
           110 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +2

Query: 317 RHLQHGERR*TSEAGGPGQDPRRPSXGPAQGQARPSPSEGPGE 445
           RH +HG        G PG+ PR P   P        P+  PGE
Sbjct: 116 RHGRHGAPGAPGRPGNPGEPPRGP-CDPTLASPCDCPAGEPGE 157


>AL137227-6|CAB70236.2|  159|Caenorhabditis elegans Hypothetical
           protein F58D5.5 protein.
          Length = 159

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 383 RPSXGPAQGQARPSP-SEGPGERQQTEPVRRQRHVREHPVVAL 508
           RPS G  Q   + +P S G   +QQ +P  RQR  +     +L
Sbjct: 17  RPSGGGGQSSHQTTPKSSGNPRQQQAQPRHRQRKAQSSSPASL 59


>AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical
           protein K12H6.6b protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 121 FFWLSFSTSFWYLGSLLTVCIVIL 50
           F + SFS S WY+ S  T+C++IL
Sbjct: 229 FVFASFSMSPWYIAS--TICVLIL 250


>AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical
           protein K12H6.6a protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 121 FFWLSFSTSFWYLGSLLTVCIVIL 50
           F + SFS S WY+ S  T+C++IL
Sbjct: 229 FVFASFSMSPWYIAS--TICVLIL 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,977,148
Number of Sequences: 27780
Number of extensions: 190590
Number of successful extensions: 1078
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)