Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1195
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    27   0.17 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   0.90 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.4  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 105 KESQKKTVTFNKNHNRYSNFDNEVSDPNDKENVANGYSGD 224
           +  + K ++   N+ +YSN++N  ++ N+  N  N Y+ +
Sbjct: 308 RSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNN 347


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 72  SKDPKYQNDVLKESQKKTVTFNKNHNRYSN 161
           SK+PK    ++     KT+  N N+N Y+N
Sbjct: 298 SKEPK----IISSLSNKTIHNNNNYNNYNN 323


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 33  SENGGSRITMQTVSKDPKY 89
           S+N   R+T  T + DP+Y
Sbjct: 217 SDNSFQRLTSSTFASDPRY 235


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 71  QQGPQVPERRAEGEPKE 121
           ++GP+VPE++ E E  E
Sbjct: 205 EKGPKVPEKKKEDEIDE 221


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 90  QNDVLKESQKKTVTFNKNHNRYSN 161
           QND  +++ KK     KN+N+  N
Sbjct: 429 QNDNNQKNNKKNANNQKNNNQNDN 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,696
Number of Sequences: 438
Number of extensions: 2190
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)