Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1193
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    28   1.7  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    27   3.0  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.9  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    26   6.9  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 485 SNKKKLPQNYYYIFSKLICDFCYLIYLN 568
           +N  ++P N YY+   LI  F +LI +N
Sbjct: 214 ANMDRIPMNPYYLIKDLITIFIFLIGIN 241


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 614 KFSKFQNR*RKGNHSNSNILSNKSHK*ASKKYNNN 510
           K SK QNR  K   S + +  +KSH   S +Y++N
Sbjct: 312 KGSKEQNRIAKEKASGAPLTKSKSHNDTSTEYDSN 346


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 478 GGRAHSPPGVKWLLEPIDIYN 416
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 623 LTVLFSGFVSFFPYLIVDRL 682
           +TVLFSGF+S +  LI  RL
Sbjct: 138 MTVLFSGFMSSYGGLIATRL 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,527
Number of Sequences: 5004
Number of extensions: 49345
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)