Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1193
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0198 + 15361048-15361746,15361854-15361946,15362035-153621...    28   7.2  

>03_03_0198 +
           15361048-15361746,15361854-15361946,15362035-15362102,
           15362255-15362393,15362481-15362483
          Length = 333

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 379 TQV*LQRPPHPSKRNVLLLHG 317
           T V +  PP P++R VLLLHG
Sbjct: 61  TSVHVWAPPRPARRPVLLLHG 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,740,570
Number of Sequences: 37544
Number of extensions: 329532
Number of successful extensions: 559
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)