Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1192
(716 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori... 109 9e-23
UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera... 87 4e-16
UniRef50_Q6YBU8 Cluster: Reverse transcriptase/integrase; n=1; L... 59 9e-08
UniRef50_UPI0000D5776D Cluster: PREDICTED: similar to Hypothetic... 54 3e-06
UniRef50_Q8T107 Cluster: Putative uncharacterized protein Bmhig;... 53 6e-06
UniRef50_UPI0000D5790F Cluster: PREDICTED: similar to RNA-direct... 52 2e-05
UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles g... 49 1e-04
UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|R... 48 2e-04
UniRef50_Q868Q6 Cluster: Reverse transcriptase; n=3; Anopheles g... 48 2e-04
UniRef50_Q9N9Z1 Cluster: Endonuclease/reverse transcriptase; n=1... 47 4e-04
UniRef50_Q868R6 Cluster: Reverse transcriptase; n=1; Anopheles g... 46 0.001
UniRef50_UPI0000D57891 Cluster: PREDICTED: similar to Hypothetic... 44 0.005
UniRef50_Q868R0 Cluster: Reverse transcriptase; n=1; Anopheles g... 42 0.020
UniRef50_Q868S2 Cluster: Reverse transcriptase; n=4; Anopheles g... 41 0.027
UniRef50_Q03272 Cluster: Retrovirus-related Pol polyprotein from... 40 0.046
UniRef50_UPI00015B460B Cluster: PREDICTED: similar to Putative 1... 38 0.19
UniRef50_Q868R8 Cluster: Reverse transcriptase; n=1; Anopheles g... 37 0.43
UniRef50_UPI0000D578E3 Cluster: PREDICTED: similar to Hypothetic... 36 1.3
UniRef50_Q868S0 Cluster: Reverse transcriptase; n=2; Anopheles g... 36 1.3
UniRef50_Q03270 Cluster: Retrovirus-related Pol polyprotein from... 35 1.7
UniRef50_UPI0000E4886E Cluster: PREDICTED: similar to sphingosin... 34 4.0
UniRef50_O44317 Cluster: Reverse transcriptase; n=1; Dugesiella ... 33 5.3
UniRef50_Q9Z5J1 Cluster: Transcription elongation protein nusA; ... 33 5.3
UniRef50_Q2W1L1 Cluster: ABC-type phosphate/phosphonate transpor... 33 7.0
UniRef50_Q2UBZ0 Cluster: Predicted protein; n=1; Aspergillus ory... 33 7.0
UniRef50_UPI00015B47DE Cluster: PREDICTED: similar to has homolo... 33 9.3
UniRef50_Q9NBI5 Cluster: Reverse transcriptase; n=7; Drosophila|... 33 9.3
>UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori|Rep:
Reverse transcriptase - Bombyx mori (Silk moth)
Length = 1076
Score = 109 bits (261), Expect = 9e-23
Identities = 47/64 (73%), Positives = 52/64 (81%)
Frame = +1
Query: 523 WSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPTA 702
WSRRLA+P+ G RTVEA+ PV DWVNR GRLTFRL QVLTGHGCFG++L RI AEPT
Sbjct: 916 WSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTT 975
Query: 703 ECHH 714
CHH
Sbjct: 976 RCHH 979
>UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera|Rep:
Reverse transcriptase - Papilio xuthus
Length = 1053
Score = 87.0 bits (206), Expect = 4e-16
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +1
Query: 523 WSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPTA 702
W RRL AG RT+ AI PV + W+ R G +TFRL QVL+GHGCFG +L RI EP+A
Sbjct: 893 WQRRLRQTRAGARTIGAICPVFMAWLRRRHGAVTFRLAQVLSGHGCFGSYLRRIGREPSA 952
Query: 703 ECHH 714
CHH
Sbjct: 953 VCHH 956
>UniRef50_Q6YBU8 Cluster: Reverse transcriptase/integrase; n=1;
Lymantria dispar|Rep: Reverse transcriptase/integrase -
Lymantria dispar (Gypsy moth)
Length = 136
Score = 59.3 bits (137), Expect = 9e-08
Identities = 24/43 (55%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +1
Query: 589 VDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIT-AEPTAECHH 714
++W+ R G +FRL QVLTGHGCFG++LH+I E T CHH
Sbjct: 1 MEWLERTHGVFSFRLVQVLTGHGCFGKYLHKIVRRESTPFCHH 43
>UniRef50_UPI0000D5776D Cluster: PREDICTED: similar to Hypothetical
115 kDa protein in type I retrotransposable element R1DM
(ORF 2); n=1; Tribolium castaneum|Rep: PREDICTED: similar
to Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2) - Tribolium
castaneum
Length = 973
Score = 54.4 bits (125), Expect = 3e-06
Identities = 27/64 (42%), Positives = 32/64 (50%)
Frame = +1
Query: 517 NLWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEP 696
NLW + R T I P + WV R G + + LTQ LTGHGCFG +L RI
Sbjct: 834 NLWQENWQQTTKARWTRRLI-PDIEKWVKRKHGEIDYHLTQALTGHGCFGTYLCRIGKIL 892
Query: 697 TAEC 708
A C
Sbjct: 893 NASC 896
>UniRef50_Q8T107 Cluster: Putative uncharacterized protein Bmhig;
n=1; Bombyx mori|Rep: Putative uncharacterized protein
Bmhig - Bombyx mori (Silk moth)
Length = 786
Score = 53.2 bits (122), Expect = 6e-06
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = -3
Query: 714 MVALCRRLGCDPVQELTETTMPSEHLRKPESEASSVTIHPIHKDRANRLD 565
MVA RRL VQ L E +PS+HL + E E+SS TI+P+ K+R NRLD
Sbjct: 281 MVAPRRRLSSYLVQVLPEAFVPSQHLHQTEGESSSATIYPVIKNRVNRLD 330
>UniRef50_UPI0000D5790F Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 932
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/62 (40%), Positives = 32/62 (51%)
Frame = +1
Query: 523 WSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPTA 702
W + G T + I P + W++R +G F LTQ LTGHGCFG +LHRI
Sbjct: 794 WQAAWQNAQNGAWTRKLI-PDIGPWLDRKQGHTDFYLTQALTGHGCFGTYLHRIGKTADE 852
Query: 703 EC 708
C
Sbjct: 853 RC 854
>UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 973
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 541 DPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPTAEC 708
D S RT A+ P + W +R G + F +TQ L+ HGCF +LH+ + +C
Sbjct: 853 DCSTKGRTTHALIPNIAAWTSRKHGEVNFYMTQFLSDHGCFRSYLHKYRHASSPDC 908
>UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|Rep:
Reverse transcriptase - Anopheles gambiae (African
malaria mosquito)
Length = 1049
Score = 48.0 bits (109), Expect = 2e-04
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +1
Query: 523 WSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPTA 702
W ++ GR T I P + W++R G + + +TQVL+GHGCF +LHR ++
Sbjct: 911 WQNEWSNSLNGRWTYLLI-PDVGAWLDRKHGDVDYFVTQVLSGHGCFRSYLHRFNRASSS 969
Query: 703 EC 708
C
Sbjct: 970 RC 971
>UniRef50_Q868Q6 Cluster: Reverse transcriptase; n=3; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1248
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 523 WSRRLADPSAGR--RTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEP 696
W ++P A R R + P + W+ + RG + F L Q+L+GH F EFLH P
Sbjct: 884 WDANASNPGASRYARWAHRLIPEVHSWMAQKRGEVDFLLAQILSGHRFFREFLHVCGFAP 943
Query: 697 TAEC 708
+ EC
Sbjct: 944 SPEC 947
>UniRef50_Q9N9Z1 Cluster: Endonuclease/reverse transcriptase; n=1;
Drosophila melanogaster|Rep: Endonuclease/reverse
transcriptase - Drosophila melanogaster (Fruit fly)
Length = 989
Score = 47.2 bits (107), Expect = 4e-04
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +1
Query: 520 LWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPT 699
+W R + GR T + I P L +W + + + + +TQ LT HGCF +L R T
Sbjct: 852 VWQTRWQESQRGRWTYKLI-PQLTEWADCEHKTVDYHMTQFLTDHGCFRGYLCRFRHVDT 910
Query: 700 AEC 708
A+C
Sbjct: 911 AQC 913
>UniRef50_Q868R6 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1022
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +1
Query: 523 WSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPTA 702
W R + ++G T I P + W+ R G + F ++Q L+GHG F LHR+ P+
Sbjct: 859 WQREWSTTTSGSWTRRLI-PNIQPWITRRHGNIEFHMSQFLSGHGFFRSHLHRMGYVPSP 917
Query: 703 EC 708
C
Sbjct: 918 VC 919
>UniRef50_UPI0000D57891 Cluster: PREDICTED: similar to Hypothetical
115 kDa protein in type I retrotransposable element R1DM
(ORF 2), partial; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to Hypothetical 115 kDa protein in
type I retrotransposable element R1DM (ORF 2), partial -
Tribolium castaneum
Length = 2033
Score = 43.6 bits (98), Expect = 0.005
Identities = 21/43 (48%), Positives = 24/43 (55%)
Frame = +1
Query: 580 PVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPTAEC 708
P L W+ RD G L + LTQ LTGHG F +L I P EC
Sbjct: 1505 PDLRVWLQRDHGTLNYYLTQFLTGHGNFRSYLSGIQRCPDDEC 1547
>UniRef50_Q868R0 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1173
Score = 41.5 bits (93), Expect = 0.020
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 538 ADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPTAEC 708
AD S R + P + W R G + F L+QVL+GHG F + L R+ P+ +C
Sbjct: 909 ADASRFVRWTHRVIPDIAAWHFRRHGEVNFHLSQVLSGHGFFRDDLCRMGFTPSPDC 965
>UniRef50_Q868S2 Cluster: Reverse transcriptase; n=4; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1201
Score = 41.1 bits (92), Expect = 0.027
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 523 WSRRLADPSAGR--RTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEP 696
W A+ A R R + P + W +R G +TF L+QVL+GHG F E L +
Sbjct: 953 WGADAANERASRYVRWAHRVIPDVGSWQSRKHGDVTFHLSQVLSGHGFFREHLCGMQLTS 1012
Query: 697 TAEC 708
+ +C
Sbjct: 1013 SPDC 1016
>UniRef50_Q03272 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R1 4
(Retrovirus-related Pol polyprotein from type I
retrotransposable element R1 4) [Includes: Reverse
transcriptase (EC 2.7.7.49); Endonuclease]; n=1; Nasonia
vitripennis|Rep: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R1 4
(Retrovirus-related Pol polyprotein from type I
retrotransposable element R1 4) [Includes: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] - Nasonia
vitripennis (Parasitic wasp)
Length = 392
Score = 40.3 bits (90), Expect = 0.046
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +1
Query: 499 VL*LGYNLWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLH 678
VL + +W R G T E P +V V D R +QVLTGHG + E LH
Sbjct: 239 VLEVANEMWQARWEASEQGNATRELFFPDVVARVKSDWIRPDHFTSQVLTGHGYYNEKLH 298
Query: 679 RITAEPTAEC 708
+++ A C
Sbjct: 299 QLSLAKAAAC 308
>UniRef50_UPI00015B460B Cluster: PREDICTED: similar to Putative 115
kDa protein in type-1 retrotransposable element R1DM
(Putative 115 kDa protein in type I retrotransposable
element R1DM) (ORF 2); n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to Putative 115 kDa protein in type-1
retrotransposable element R1DM (Putative 115 kDa protein
in type I retrotransposable element R1DM) (ORF 2) -
Nasonia vitripennis
Length = 680
Score = 38.3 bits (85), Expect = 0.19
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +1
Query: 514 YNLWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAE 693
Y W RR + + GR T E ++ V + RD + R+ +LTGHG FL
Sbjct: 527 YEKWQRRWDESTKGRVTYEWMKDVRLSG-RRDYFDPSLRVCYLLTGHGSLNAFLFERNLH 585
Query: 694 PTAEC 708
T EC
Sbjct: 586 ETPEC 590
>UniRef50_Q868R8 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 988
Score = 37.1 bits (82), Expect = 0.43
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 523 WSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHG 657
W+ P A + P + WV+R G + F LTQ+LTGHG
Sbjct: 876 WTTGAGQPGAPGLKTRRLIPDINLWVSRKHGEVDFFLTQLLTGHG 920
>UniRef50_UPI0000D578E3 Cluster: PREDICTED: similar to Hypothetical
115 kDa protein in type I retrotransposable element R1DM
(ORF 2); n=2; Tribolium castaneum|Rep: PREDICTED: similar
to Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2) - Tribolium
castaneum
Length = 1208
Score = 35.5 bits (78), Expect = 1.3
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 523 WSRRLADPSAGRRTVEAIRPVLVDWVN--RDRGRLTFRLTQVLTGHGCFGEFLHRITAEP 696
W R S GR T I P + W+ ++ G++ F LTQ L+GHG F +L ++
Sbjct: 851 WQNRWNASSKGRWTHRLI-PNIRQWIEGKKNAGQVNFYLTQFLSGHGDFRCYLKKMHRAE 909
Query: 697 TAEC 708
C
Sbjct: 910 NDRC 913
>UniRef50_Q868S0 Cluster: Reverse transcriptase; n=2; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1009
Score = 35.5 bits (78), Expect = 1.3
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 523 WSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHR--ITAEP 696
W R + GR T I P + W++R G + F L+Q L+ HG + LHR +T P
Sbjct: 854 WQREWDESVHGRWTYRLI-PDVNRWISRRFGGVDFFLSQFLSSHGFYAYQLHRMQLTGSP 912
Query: 697 TAE 705
+
Sbjct: 913 LCD 915
>UniRef50_Q03270 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R1 2
(Retrovirus-related Pol polyprotein from type I
retrotransposable element R1 2) [Includes: Reverse
transcriptase (EC 2.7.7.49); Endonuclease]; n=1; Nasonia
vitripennis|Rep: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R1 2
(Retrovirus-related Pol polyprotein from type I
retrotransposable element R1 2) [Includes: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] - Nasonia
vitripennis (Parasitic wasp)
Length = 410
Score = 35.1 bits (77), Expect = 1.7
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +1
Query: 514 YNLWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFR-LTQVLTGHGCFGEFLHRITA 690
Y +W R GR T I+ V + R R R + +LTGHG FLH+
Sbjct: 268 YEIWQERWVVSMKGRVTARFIKDV--KYAGRSRSFEPDRWVVNILTGHGTLNAFLHKRGL 325
Query: 691 EPTAEC 708
+A C
Sbjct: 326 SESASC 331
>UniRef50_UPI0000E4886E Cluster: PREDICTED: similar to sphingosine
1-phosphate phosphohydrolase 2; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to sphingosine
1-phosphate phosphohydrolase 2 - Strongylocentrotus
purpuratus
Length = 411
Score = 33.9 bits (74), Expect = 4.0
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = -3
Query: 693 LGCDPVQELT-ETTMPSEHLRKPESEASSVTIH----PIHKDRANRLDGPTTS---RRIG 538
L C PV ++ E P+ + +KP + S+ H P H + L GP +S RR+G
Sbjct: 23 LECVPVADIQDEPPQPNSNNKKPHNGQSNGVTHRHVSPQHDVSSQSLQGPGSSGESRRLG 82
Query: 537 QPSGPQIIA*LKYRRH 490
P+ A ++YR H
Sbjct: 83 DPNATVSAAPVEYRVH 98
>UniRef50_O44317 Cluster: Reverse transcriptase; n=1; Dugesiella
sp.|Rep: Reverse transcriptase - Dugesiella sp
Length = 488
Score = 33.5 bits (73), Expect = 5.3
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 523 WSRRLADPSAGRRTVEAIR-PVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHR--ITAE 693
W+ R A GR T I P +W+ + +TQ+LT HG ++HR +T+
Sbjct: 399 WATRWAGSDKGRHTHNIISAPGFKEWI------FSKEITQILTNHGRTPSYMHRFGLTSS 452
Query: 694 PTAEC 708
P C
Sbjct: 453 PLCSC 457
>UniRef50_Q9Z5J1 Cluster: Transcription elongation protein nusA;
n=25; Actinomycetales|Rep: Transcription elongation
protein nusA - Mycobacterium leprae
Length = 347
Score = 33.5 bits (73), Expect = 5.3
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +3
Query: 534 AGRSFGWS*DRRGDSPGPCGLGES*QRTPHFPAY 635
A R GW D RGDSP PC G+S Q H A+
Sbjct: 313 AARLTGWRIDIRGDSP-PCSAGQSEQNASHGMAH 345
>UniRef50_Q2W1L1 Cluster: ABC-type phosphate/phosphonate transport
system, periplasmic component; n=2;
Magnetospirillum|Rep: ABC-type phosphate/phosphonate
transport system, periplasmic component -
Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
Length = 288
Score = 33.1 bits (72), Expect = 7.0
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 535 LADPSAGRRTVEAIRPVLVDWVNRDRGRLTF 627
LA P G TV+AIR L ++ N DRGR F
Sbjct: 221 LAHPRLGAETVQAIRTALGEFENTDRGRTFF 251
>UniRef50_Q2UBZ0 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 987
Score = 33.1 bits (72), Expect = 7.0
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 680 RCRNSPKQPCPVST-CVSRKVRRPLSRFTQSTRTGRIASTVLR 555
R +SP P PV SR+ RRP++RF + R G + LR
Sbjct: 347 RAYSSPTSPAPVPVQASSRRRRRPIARFVRLVRVGIALESALR 389
>UniRef50_UPI00015B47DE Cluster: PREDICTED: similar to has homology
with reverse transcriptase; 5 end of coding region for
ORF2 undetermined; putative; n=3; Nasonia
vitripennis|Rep: PREDICTED: similar to has homology with
reverse transcriptase; 5 end of coding region for ORF2
undetermined; putative - Nasonia vitripennis
Length = 883
Score = 32.7 bits (71), Expect = 9.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 595 WVNRDRGRLTFRLTQVLTGHGCFGEFL 675
WV+R G + F LTQ +GHG F +L
Sbjct: 274 WVDRKWGEVNFYLTQFFSGHGYFRSYL 300
>UniRef50_Q9NBI5 Cluster: Reverse transcriptase; n=7;
Drosophila|Rep: Reverse transcriptase - Drosophila
palustris
Length = 359
Score = 32.7 bits (71), Expect = 9.3
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = +1
Query: 523 WSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPTA 702
W R + GR T IR V D G + L +LTGHG FLH+ +
Sbjct: 226 WQVRWSTSVKGRVTHRFIRDVTFVRCRPDFG-FSLSLGYLLTGHGSLNAFLHKRCLSDSQ 284
Query: 703 EC 708
EC
Sbjct: 285 EC 286
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,761,610
Number of Sequences: 1657284
Number of extensions: 14385612
Number of successful extensions: 34107
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 32774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34100
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -