Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1192
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    27   2.7  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   4.7  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   6.2  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   8.2  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    25   8.2  

>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 327 LIEYLSIGKRNHRIFMMIEGLKKMATVKSCTSLFNL*LPRPRQSSN 190
           L EY     R   IF  +  LKKM        LFN  +PR R  ++
Sbjct: 174 LDEYTKTHMRETAIFPFLTSLKKMELGHGILKLFNEVIPRLRHGND 219


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -1

Query: 701 AVGSAVIRCRNSPKQPCPVSTCVSRKVRRPLSRFTQSTRTGRIASTVLRPAEGSASRLDH 522
           A  S V       KQ  PVST  +   RRP S  T  ++TG + +   + + G   R DH
Sbjct: 24  ASSSGVNGTNGGMKQVSPVSTARTSIARRPPS--TVGSQTGSLVNAPPKRSSG-IERFDH 80


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 556 DQPKDRPAVWTTDY 515
           + P +RPA+W TDY
Sbjct: 364 EDPANRPALWLTDY 377


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 11  VDCIGTMNDLPHKQGRMIITSRHRYLQN 94
           VD +  +ND+   Q   + T R R+L+N
Sbjct: 229 VDYLSKVNDVEQSQNVKVFTERIRFLEN 256


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 711 VALCRRLGCDPVQELTETTMPSEHLRKPESEA 616
           V L R++G +  Q++ E T    H   PESEA
Sbjct: 227 VNLIRKMGHEAKQQVNEYTAIPLHEMNPESEA 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,064
Number of Sequences: 5004
Number of extensions: 58961
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)