Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1192
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253...    31   1.2  
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167...    30   2.1  
03_01_0095 + 759530-760123                                             29   2.8  
09_02_0028 + 3109502-3110232,3110274-3110727                           28   8.5  
03_02_1000 + 13111912-13112572,13112616-13113172                       28   8.5  
03_02_0505 + 8981856-8982879,8983014-8983129,8985407-8985994,898...    28   8.5  

>11_06_0442 -
           23622633-23623000,23623149-23623721,23624795-23625335,
           23625807-23625982,23626081-23626804
          Length = 793

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -3

Query: 258 MATVKSCTSLFNL*LPRPRQSSNITNSLTNLLPILGILSTLPRMFEL 118
           M+++ +CT L NL L R +    I +S+TNL   L I ++L    EL
Sbjct: 265 MSSLTNCTQLTNLWLDRNKLQGIIPSSITNLSEGLKIPTSLGECLEL 311


>10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,
            1678976-1679054,1679168-1679207,1679580-1679767,
            1679869-1680024,1680752-1681713,1681866-1681914
          Length = 952

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 247  DCRHFLQTFYHHEDPVISFSYRQILNQSALALCFTDYTMA*RVFK*FCLHI*LLTYLCY- 423
            D RH+L +F H +D + S+  R++  ++ L  C   + +       +CL+      + + 
Sbjct: 785  DLRHYLWSFSHVKDLIFSYQGRKLTIENNLQWCPKFFNLVGLTLGKWCLNANFYALIVFL 844

Query: 424  -QTSKLAKLLILL 459
              + +L KL ++L
Sbjct: 845  QNSPRLEKLTLIL 857


>03_01_0095 + 759530-760123
          Length = 197

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 628 GK*GVLCHDSPNPQGPGESPRRSYDQPK 545
           G  G  C   P+P+GP  +PRR++  P+
Sbjct: 47  GDDGYCCPAPPHPEGPPRAPRRAHTVPQ 74


>09_02_0028 + 3109502-3110232,3110274-3110727
          Length = 394

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 523 WSRRLADPSAGRRTVEAIRPVLVDWVNRDRG 615
           W R  +DP+  RR     RP L+ ++  DRG
Sbjct: 47  WRRAASDPAIFRRFFPLRRPPLIGFILTDRG 77


>03_02_1000 + 13111912-13112572,13112616-13113172
          Length = 405

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 626 KVRRPLSRFTQSTRTGRIASTVLRPAEGSASRLDHR 519
           + RRPL+R+T S   G    T+L   +G     DHR
Sbjct: 101 EARRPLARYTASFPGGYTHCTLLASCDGLLLFADHR 136


>03_02_0505 +
           8981856-8982879,8983014-8983129,8985407-8985994,
           8986091-8986192
          Length = 609

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/51 (27%), Positives = 18/51 (35%)
 Frame = -1

Query: 713 WWHSAVGSAVIRCRNSPKQPCPVSTCVSRKVRRPLSRFTQSTRTGRIASTV 561
           WW        +     P  P P +TC   +V    SRF       R+A  V
Sbjct: 121 WWRPGEMRGHVWLDEQPVGPWPAATCPPYRVSADASRFGDRASASRMARIV 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,177,975
Number of Sequences: 37544
Number of extensions: 393412
Number of successful extensions: 849
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)