Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1192
         (716 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112336-1|AAI12337.1| 1607|Homo sapiens ROBO1 protein protein.        31   5.4  
BC012981-1|AAH12981.1|  241|Homo sapiens ANKS6 protein protein.        31   5.4  

>BC112336-1|AAI12337.1| 1607|Homo sapiens ROBO1 protein protein.
          Length = 1607

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 528  QTAGRSFGWS*DRRGDSPGPCGLGES*QRTPHFPAYAGAHWAWLFR*VPA--PDHSRAD 698
            Q  G S+  S DR   + G  G  +   RTP  P   G +WA L    PA  P HS ++
Sbjct: 1099 QNTGGSYNSS-DRGSSTSGSQGHKKGGARTPKVPKQGGMNWADLLPPPPAHPPPHSNSE 1156


>BC012981-1|AAH12981.1|  241|Homo sapiens ANKS6 protein protein.
          Length = 241

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 714 MVALCRRLGCDPVQELTETTMPSEHLRKPESEASSVTIHPIHKDRANRLDGPTTSR-RIG 538
           + AL  RLG    Q+L E     +HL   E  A  V +   H+D  + LD  TT R + G
Sbjct: 137 LAALTGRLGV--AQQLVEKGANPDHLSVLEKTAFEVALDCKHRDLVDYLDPLTTVRPKTG 194

Query: 537 QPSGP 523
           Q + P
Sbjct: 195 QAACP 199


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,387,536
Number of Sequences: 237096
Number of extensions: 2213295
Number of successful extensions: 4202
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4199
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)